ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100527526	putative ubiquitin-conjugating enzyme
gma-r.7	100527526	putative ubiquitin-conjugating enzyme
gma-m.5	100527526	putative ubiquitin-conjugating enzyme
gma-u.5	100527756	uncharacterized LOC100527756
gma-u.5	100805356	ubiquitin-conjugating enzyme E2 5-like
gma-u.5	100804969	ubiquitin-conjugating enzyme E2 5
mtr-u.5	25500869	ubiquitin-conjugating enzyme E2 5
mtr-u.5	25502069	ubiquitin-conjugating enzyme E2 5
ppo-u.5	7496982	ubiquitin-conjugating enzyme E2-23 kDa
ppo-u.5	7457718	ubiquitin-conjugating enzyme E2 4
ppo-u.5	7472757	ubiquitin-conjugating enzyme E2 4
ath-u.5	UBC6	ubiquitin-conjugating enzyme 6
ath-u.5	UBC4	ubiquitin conjugating enzyme 4
ath-u.5	UBC5	ubiquitin-conjugating enzyme 5
bra-r.6	103850216	ubiquitin-conjugating enzyme E2 4
bra-r.6	103864075	ubiquitin-conjugating enzyme E2 4
bra-r.6	103866261	ubiquitin-conjugating enzyme E2 6
vvi-u.5	100253472	ubiquitin-conjugating enzyme E2 5
vvi-u.5	100250088	ubiquitin-conjugating enzyme E2-23 kDa
vvi-u.5	100244806	ubiquitin-conjugating enzyme E2-23 kDa
ghi-r.1	107947039	ubiquitin-conjugating enzyme E2 4
ghi-r.1	107933613	ubiquitin-conjugating enzyme E2-23 kDa
bna-r.1	106438269	ubiquitin-conjugating enzyme E2 6
bna-r.1	125575681	ubiquitin-conjugating enzyme E2 4-like
bna-r.1	106429623	ubiquitin-conjugating enzyme E2 6
cit-r.1	102625533	ubiquitin-conjugating enzyme E2 4-like
cit-r.1	102631116	ubiquitin-conjugating enzyme E2-23 kDa-like
cit-r.1	102610351	ubiquitin-conjugating enzyme E2 5
sly-u.5	101254242	ubiquitin-conjugating enzyme E2-23 kDa
sly-u.5	101265863	ubiquitin-conjugating enzyme E2-23 kDa
sly-u.5	101261295	ubiquitin-conjugating enzyme E2-23 kDa
sot-r.1	102592309	ubiquitin-conjugating enzyme E2 5
sot-r.1	102604229	ubiquitin-conjugating enzyme E2-23 kDa-like
sot-r.1	102579689	ubiquitin-conjugating enzyme E2-23 kDa-like
nta-r.1	107810175	ubiquitin-conjugating enzyme E2 5
nta-r.1	107798708	ubiquitin-conjugating enzyme E2-23 kDa
nta-r.1	107795844	ubiquitin-conjugating enzyme E2-23 kDa-like
osa-u.5	4348755	ubiquitin-conjugating enzyme E2 4
zma-u.5	115565779	ubiquitin-conjugating enzyme family
zma-u.5	100857003	ubiquitin-conjugating enzyme E2-21 kDa 1
zma-u.5	100194405	putative ubiquitin-conjugating enzyme family
tae-r.2	123123982	ubiquitin-conjugating enzyme E2-23 kDa-like
tae-r.2	123044379	ubiquitin-conjugating enzyme E2 4
tae-r.2	123088149	ubiquitin-conjugating enzyme E2 4
hvu-r.1	123395252	ubiquitin-conjugating enzyme E2-23 kDa
hvu-r.1	123429951	ubiquitin-conjugating enzyme E2 4-like
hvu-r.1	123449717	ubiquitin-conjugating enzyme E2 4-like
sbi-r.1	8085479	ubiquitin-conjugating enzyme E2 4
sbi-r.1	8059292	ubiquitin-conjugating enzyme E2 4
bdi-r.1	100845410	ubiquitin-conjugating enzyme E2 4
bdi-r.1	100827010	ubiquitin-conjugating enzyme E2 4
bdi-r.1	100821138	ubiquitin-conjugating enzyme E2-23 kDa
cre-r.1	CHLRE_01g027200v5	uncharacterized protein

Top 50 coexpressed genes to 100527526 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100527526 (gma-u.5 coexpression data)

CoexMap"100527526"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx04120 [list] [network] Ubiquitin mediated proteolysis (237 genes)

GO BP

GO:0000209 [list] [network] protein polyubiquitination	(127 genes)	IEA
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process	(481 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0061631 [list] [network] ubiquitin conjugating enzyme activity

(42 genes)

IEA

Protein

NP_001237311.2 [sequence] [blastp]
XP_040871119.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto_nucl 4, mito 1, cyto 1, chlo_mito 1	(predict for NP_001237311.2)
nucl 6, cyto_nucl 4, mito 1, cyto 1, chlo_mito 1	(predict for XP_040871119.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001237311.2)
other 7	(predict for XP_040871119.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100527526	gma-r.7 for 100527526	gma-m.5 for 100527526	gma-u.5 for 100527756	gma-u.5 for 100805356	gma-u.5 for 100804969	mtr-u.5 for 25500869	mtr-u.5 for 25502069	ppo-u.5 for 7496982	ppo-u.5 for 7457718	ppo-u.5 for 7472757	ath-u.5 for UBC6	ath-u.5 for UBC4	ath-u.5 for UBC5	bra-r.6 for 103850216	bra-r.6 for 103864075	bra-r.6 for 103866261	vvi-u.5 for 100253472	vvi-u.5 for 100250088	vvi-u.5 for 100244806	ghi-r.1 for 107947039	ghi-r.1 for 107933613	bna-r.1 for 106438269	bna-r.1 for 125575681	bna-r.1 for 106429623	cit-r.1 for 102625533	cit-r.1 for 102631116	cit-r.1 for 102610351	sly-u.5 for 101254242	sly-u.5 for 101265863	sly-u.5 for 101261295	sot-r.1 for 102592309	sot-r.1 for 102604229	sot-r.1 for 102579689	nta-r.1 for 107810175	nta-r.1 for 107798708	nta-r.1 for 107795844	osa-u.5 for 4348755	zma-u.5 for 115565779	zma-u.5 for 100857003	zma-u.5 for 100194405	tae-r.2 for 123123982	tae-r.2 for 123044379	tae-r.2 for 123088149	hvu-r.1 for 123395252	hvu-r.1 for 123429951	hvu-r.1 for 123449717	sbi-r.1 for 8085479	sbi-r.1 for 8059292	bdi-r.1 for 100845410	bdi-r.1 for 100827010	bdi-r.1 for 100821138	cre-r.1 for CHLRE_01g027200v5

Ortholog

Ortholog ID: 1076

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

UBC6

UBC4

UBC5

Function^*

ubiquitin-conjugating enzyme E2 5

ubiquitin-conjugating enzyme E2 4

ubiquitin-conjugating enzyme E2 5

ubiquitin-conjugating enzyme E2-23 kDa

ubiquitin-conjugating enzyme E2 4

ubiquitin-conjugating enzyme 6

ubiquitin conjugating enzyme 4

ubiquitin-conjugating enzyme 5

ubiquitin-conjugating enzyme E2 4

ubiquitin-conjugating enzyme E2 6

ubiquitin-conjugating enzyme E2 5

ubiquitin-conjugating enzyme E2-23 kDa

ubiquitin-conjugating enzyme E2 4

ubiquitin-conjugating enzyme E2 4-like

ubiquitin-conjugating enzyme E2 4

ubiquitin-conjugating enzyme E2 5

ubiquitin-conjugating enzyme E2 5-like

ubiquitin-conjugating enzyme E2-23 kDa

ubiquitin-conjugating enzyme E2 5

ubiquitin-conjugating enzyme E2-23 kDa-like

ubiquitin-conjugating enzyme E2-23 kDa

ubiquitin-conjugating enzyme E2-23 kDa-like

ubiquitin-conjugating enzyme E2-23 kDa

ubiquitin-conjugating enzyme E2-23 kDa-like

ubiquitin-conjugating enzyme E2 4

putative ubiquitin-conjugating enzyme family

uncharacterized LOC100193596

putative ubiquitin-conjugating enzyme family

ubiquitin-conjugating enzyme E2-23 kDa-like

ubiquitin-conjugating enzyme E2 4

ubiquitin-conjugating enzyme E2-23 kDa

ubiquitin-conjugating enzyme E2 4-like

ubiquitin-conjugating enzyme E2 4

ubiquitin-conjugating enzyme E2-23 kDa

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4
gma00564	Glycerophospholipid metabolism	2
gma00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04136	Autophagy - other	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo04141	Protein processing in endoplasmic reticulum	2
ppo04130	SNARE interactions in vesicular transport	2
ppo04145	Phagosome	2
ppo04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	4
ppo04141	Protein processing in endoplasmic reticulum	3
ppo04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	3
ath00100	Steroid biosynthesis	2
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	5
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	4
ath04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	2
bra00564	Glycerophospholipid metabolism	2
bra00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	10
ghi03083	Polycomb repressive complex	6
ghi04141	Protein processing in endoplasmic reticulum	6
ghi00190	Oxidative phosphorylation	2
ghi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00040	Pentose and glucuronate interconversions	2
cit00051	Fructose and mannose metabolism	2
cit04120	Ubiquitin mediated proteolysis	2
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00040	Pentose and glucuronate interconversions	2
cit00051	Fructose and mannose metabolism	2
cit04120	Ubiquitin mediated proteolysis	2
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04136	Autophagy - other	3
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	6
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	3
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04136	Autophagy - other	7
nta04120	Ubiquitin mediated proteolysis	2
nta00240	Pyrimidine metabolism	2
nta00410	beta-Alanine metabolism	2
nta00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04142	Lysosome	3
osa00600	Sphingolipid metabolism	2
osa04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	4
zma04120	Ubiquitin mediated proteolysis	3
zma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	5
zma04136	Autophagy - other	4
zma04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	4
zma04136	Autophagy - other	2
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00010	Glycolysis / Gluconeogenesis	4
tae00710	Carbon fixation by Calvin cycle	4
tae01200	Carbon metabolism	4
tae01230	Biosynthesis of amino acids	4
tae00051	Fructose and mannose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00010	Glycolysis / Gluconeogenesis	4
tae00710	Carbon fixation by Calvin cycle	4
tae01200	Carbon metabolism	4
tae01230	Biosynthesis of amino acids	4
tae04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	3
hvu00600	Sphingolipid metabolism	2
hvu04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi04136	Autophagy - other	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2
sbi04144	Endocytosis	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2
bdi04141	Protein processing in endoplasmic reticulum	2
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04136	Autophagy - other	3

Expression

Expression pattern

Entrez Gene ID^*

100804969

100791133

100812138

25500869

25502069

7496982

7472757

7457348

819211

834136

842683

103864075

103866261

103858201

100253472

100250088

100244806

107947039

107922740

125575681

106352714

125607946

102610351

127900532

102610071

101254242

101265863

101253514

102592309

102604229

102603326

107794743

107788813

107793496

4348755

100194405

100193596

101202716

123123982

123088149

123093519

123395252

123429951

123449717

8085479

8059292

100845410

100827010

100821138

5715306

The preparation time of this page was 0.2 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	2	3	3	3	3	2	3	3	3	3	3	1	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100527526 (gma-u.5 coexpression data)

Top 50 enrichment test to 100527526 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**