ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	TCP4	TCP transcription factor 4
sly-r.6	TCP4	TCP transcription factor 4
sly-u.5	TCP5	TCP transcription factor 5
sly-u.5	TCP6	TCP transcription factor 6
ath-u.5	PTF1	plastid transcription factor 1
ath-u.5	TCP17	TCP domain protein 17
ath-u.5	TCP5	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
gma-u.5	102665855	transcription factor TCP5
gma-u.5	102670246	transcription factor TCP17
gma-u.5	100788984	transcription factor TCP5
vvi-u.5	100263410	transcription factor TCP13
vvi-u.5	100852855	transcription factor TCP5
ppo-u.5	112327176	transcription factor TCP13
ppo-u.5	7467903	transcription factor TCP13
mtr-u.5	25495356	transcription factor TCP13
osa-u.5	4339298	transcription factor TCP13
osa-u.5	4327032	transcription factor PCF6-like
zma-u.5	100281328	uncharacterized LOC100281328
zma-u.5	100194214	uncharacterized LOC100194214
zma-u.5	100284941	uncharacterized LOC100284941

Annotation

functional annotation

KEGG

GO BP

GO:2000032 [list] [network] regulation of secondary shoot formation

(18 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2947 genes)

IEA

GO MF

GO:0043565 [list] [network] sequence-specific DNA binding	(778 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1125 genes)	IEA

Protein

NP_001234564.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, chlo 1, vacu 1

(predict for NP_001234564.2)

Subcellular
localization
TargetP

chlo 9

(predict for NP_001234564.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for TCP4	sly-r.6 for TCP4	sly-u.5 for TCP5	sly-u.5 for TCP6	ath-u.5 for PTF1	ath-u.5 for TCP17	ath-u.5 for TCP5	gma-u.5 for 102665855	gma-u.5 for 102670246	gma-u.5 for 100788984	vvi-u.5 for 100263410	vvi-u.5 for 100852855	ppo-u.5 for 112327176	ppo-u.5 for 7467903	mtr-u.5 for 25495356	osa-u.5 for 4339298	osa-u.5 for 4327032	zma-u.5 for 100281328	zma-u.5 for 100194214	zma-u.5 for 100284941

Ortholog

Ortholog ID: 1662

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

TCP5

LOC102601022

LOC107775251

LOC107773728

PTF1

TCP5

Function^*

TCP transcription factor 5

transcription factor TCP13-like

transcription factor TCP5-like

plastid transcription factor 1

TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

transcription factor TCP13

transcription factor TCP5

transcription factor TCP13

transcription factor TCP17

transcription factor TCP5

transcription factor TCP13-like

transcription factor TCP5

transcription factor TCP17

transcription factor TCP13

transcription factor PCF6-like

uncharacterized LOC100284941

uncharacterized LOC100194214

uncharacterized LOC123079257

uncharacterized LOC123062141

transcription factor PCF6-like

uncharacterized LOC123440284

uncharacterized LOC8072107

transcription factor PCF8

transcription factor TCP24

transcription factor PCF6

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00220	Arginine biosynthesis	2
sly01210	2-Oxocarboxylic acid metabolism	2
sly01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00902	Monoterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00904	Diterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00902	Monoterpenoid biosynthesis	2
gma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00196	Photosynthesis - antenna proteins	3
vvi00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00910	Nitrogen metabolism	3
ghi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00040	Pentose and glucuronate interconversions	9
ghi00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	2
cit00941	Flavonoid biosynthesis	2
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00100	Steroid biosynthesis	2
cit00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00230	Purine metabolism	2
hvu01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

100736516

102601022

107775251

107773728

821061

836218

100803100

100816424

103854927

103860559

100852855

100263410

112327176

7467903

25495356

107946551

107953484

106438918

102610499

102628733

4339298

4327032

100284941

100194214

123079257

123062141

123416458

123440284

8072107

8080107

100831334

100833785

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to TCP4 (sly-u.5 coexpression data)

Top 50 enrichment test to TCP4 (sly-u.5 coexpression data)


Species	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	3	3	2	2	1	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to TCP4 (sly-u.5 coexpression data)

Top 50 enrichment test to TCP4 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**