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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100778928   serine/arginine-rich splicing factor SC35 
 gma-r.7   100778928   serine/arginine-rich splicing factor SC35 
 gma-m.5   100778928   serine/arginine-rich splicing factor SC35 
 gma-u.5   100804370   serine/arginine-rich splicing factor SC35-like protein 
 mtr-u.5   25493273   serine/arginine-rich splicing factor SC35 
 mtr-u.5   11409922   serine/arginine-rich splicing factor SC35 
 ppo-u.5   7486602   serine/arginine-rich splicing factor SC35 
 ppo-u.5   18096633   serine/arginine-rich splicing factor SC35 
 ppo-u.5   7463216   serine/arginine-rich splicing factor SC35 
 ath-u.5   SC35   serine/arginine-rich splicing factor-like protein, putative 
 vvi-u.5   100242306   serine/arginine-rich splicing factor SC35 
 vvi-u.5   100243776   serine/arginine-rich splicing factor SC35 
 sly-u.5   101251771   serine/arginine-rich splicing factor SC35 
 sly-u.5   101257217   serine/arginine-rich splicing factor SC35 
 osa-u.5   4345884   serine/arginine-rich splicing factor SC35 
 osa-u.5   4343955   serine/arginine-rich splicing factor SC35 
 osa-u.5   4333005   serine/arginine-rich splicing factor SC35 
 zma-u.5   100282036   uncharacterized LOC100282036 
 zma-u.5   100272627   uncharacterized LOC100272627 

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Top 50 coexpressed genes to 100778928 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100778928 (gma-u.5 coexpression data)

CoexMap"100778928"


gmaLOC100778928 | Entrez gene ID : 100778928    
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 3 1 2 2 3 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03040 [list] [network] Spliceosome (466 genes)
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (2019 genes)  IEA  
Protein XP_003531034.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_003531034.1)
Subcellular
localization
TargetP
other 8  (predict for XP_003531034.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100778928

.
gma-r.7
for
100778928

.
gma-m.5
for
100778928

.
gma-u.5
for
100804370

.
mtr-u.5
for
25493273

.
mtr-u.5
for
11409922

.
ppo-u.5
for
7486602

.
ppo-u.5
for
18096633

.
ppo-u.5
for
7463216

.
ath-u.5
for
SC35

.
vvi-u.5
for
100242306

.
vvi-u.5
for
100243776

.
sly-u.5
for
101251771

.
sly-u.5
for
101257217

.
osa-u.5
for
4345884

.
osa-u.5
for
4343955

.
osa-u.5
for
4333005

.
zma-u.5
for
100282036

.
zma-u.5
for
100272627

.


Ortholog ID: 3991
Species ath gma gma sly sly osa osa zma bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol SC35 LOC100804370 LOC100778928 LOC101257217 LOC101251771 LOC4345884 LOC4343955 LOC100282036 LOC103873839 LOC100243776 LOC100242306 LOC7463216 LOC7486602 LOC11409922 LOC25493273 LOC123044152 LOC123187898 LOC123425239 LOC107948604 LOC107949131 LOC106348073 LOC106426678 LOC8080466 LOC110432886 LOC102597653 LOC102583092 LOC102609737 LOC102613407 LOC100824108 LOC100826320 LOC107787334 LOC107831149
Function* serine/arginine-rich splicing factor-like protein, putative serine/arginine-rich splicing factor SC35-like protein serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 uncharacterized LOC100282036 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35-like serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35-like serine/arginine-rich splicing factor 2-like serine/arginine-rich splicing factor SC35-like serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich splicing factor SC35 serine/arginine-rich SC35-like splicing factor SCL30A uncharacterized LOC107831149
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 12
ath03013 Nucleocytoplasmic transport 3
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra03040 Spliceosome 4
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
vvi04626 Plant-pathogen interaction 3
vvi03040 Spliceosome 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr04141 Protein processing in endoplasmic reticulum 3
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 10
mtr00510 N-Glycan biosynthesis 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi04120 Ubiquitin mediated proteolysis 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 7
nta03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836541 100804370 100778928 101257217 101251771 4345884 4343955 100282036 103873839 100243776 100242306 7463216 7486602 11409922 25493273 123044152 123187898 123425239 107948604 107949131 106348073 106426678 8080466 110432886 102597653 102583092 102609737 102613407 100824108 100826320 107787334 107831149
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