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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100779213   transcription factor bHLH96 
 gma-r.7   100779213   transcription factor bHLH96 
 gma-u.5   100777413   transcription factor bHLH94 
 gma-u.5   100782243   transcription factor bHLH94 
 gma-u.5   100789380   transcription factor bHLH94 
 mtr-u.5   11410745   transcription factor bHLH94 
 mtr-u.5   11431242   transcription factor bHLH94 
 mtr-u.5   11429781   transcription factor bHLH96 
 ppo-u.5   7473872   transcription factor bHLH94 
 ppo-u.5   18098837   transcription factor bHLH94 
 ath-u.5   AT1G22490   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT1G72210   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 vvi-u.5   100261443   transcription factor bHLH94 
 vvi-u.5   100259155   transcription factor bHLH96 
 sly-u.5   101268467   transcription factor bHLH94-like 
 sly-u.5   101264779   transcription factor bHLH96-like 
 osa-u.5   9267272   transcription factor bHLH94 
 osa-u.5   4348490   transcription factor bHLH96 
 osa-u.5   4331887   transcription factor bHLH96 
 zma-u.5   100273916   uncharacterized LOC100273916 
 zma-u.5   100285428   uncharacterized LOC100285428 

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Top 50 coexpressed genes to 100779213 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100779213 (gma-u.5 coexpression data)

CoexMap"100779213"


gmaLOC100779213 | Entrez gene ID : 100779213      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 3 2 2 2 2 3 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (844 genes)  IEA  
GO CC
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (449 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (557 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (899 genes)  IEA  
Protein XP_003556500.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_003556500.1)
Subcellular
localization
TargetP
other 8  (predict for XP_003556500.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100779213

.
gma-r.7
for
100779213

.
gma-u.5
for
100777413

.
gma-u.5
for
100782243

.
gma-u.5
for
100789380

.
mtr-u.5
for
11410745

.
mtr-u.5
for
11431242

.
mtr-u.5
for
11429781

.
ppo-u.5
for
7473872

.
ppo-u.5
for
18098837

.
ath-u.5
for
AT1G22490

.
ath-u.5
for
AT1G72210

.
vvi-u.5
for
100261443

.
vvi-u.5
for
100259155

.
sly-u.5
for
101268467

.
sly-u.5
for
101264779

.
osa-u.5
for
9267272

.
osa-u.5
for
4348490

.
osa-u.5
for
4331887

.
zma-u.5
for
100273916

.
zma-u.5
for
100285428

.


Ortholog ID: 1216
Species ath ath gma gma sly sly osa osa zma bra bra vvi vvi ppo mtr hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol AT1G72210 AT1G22490 LOC100805420 LOC100789380 LOC101264779 LOC101268467 LOC9267272 LOC4348490 LOC100280340 LOC103830799 LOC103835698 LOC100261443 LOC100259155 LOC7490193 LOC11410745 LOC123447165 LOC107951390 LOC107905077 LOC106454793 LOC106354199 LOC8081994 LOC102584856 LOC102594599 LOC102623040 LOC100837512 LOC107799333 LOC107807804
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH94 transcription factor bHLH94 transcription factor bHLH96-like transcription factor bHLH94-like transcription factor bHLH94 transcription factor bHLH96 uncharacterized LOC100280340 transcription factor bHLH96 transcription factor bHLH94 transcription factor bHLH94 transcription factor bHLH96 transcription factor bHLH94 transcription factor bHLH94 transcription factor bHLH96-like transcription factor bHLH96 transcription factor bHLH96 transcription factor bHLH94 transcription factor bHLH96 transcription factor bHLH96 transcription factor bHLH96-like transcription factor bHLH96-like transcription factor bHLH96 transcription factor bHLH94 transcription factor bHLH94 transcription factor bHLH96
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 3
osa04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00910 Nitrogen metabolism 3
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 3
mtr04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00920 Sulfur metabolism 4
sot01320 Sulfur cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta01240 Biosynthesis of cofactors 2
nta03083 Polycomb repressive complex 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 3
nta04075 Plant hormone signal transduction 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843553 838855 100805420 100789380 101264779 101268467 9267272 4348490 100280340 103830799 103835698 100261443 100259155 7490193 11410745 123447165 107951390 107905077 106454793 106354199 8081994 102584856 102594599 102623040 100837512 107799333 107807804
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