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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   SPL9C   squamosa promoter-binding-like protein 9c 
 gma-r.7   SPL9C   squamosa promoter-binding-like protein 9c 
 gma-u.5   100802206   squamosa promoter-binding-like protein 8 
 gma-u.5   100805328   squamosa promoter-binding-like protein 13A 
 gma-u.5   100806582   squamosa promoter-binding-like protein 7 
 mtr-u.5   25499846   squamosa promoter-binding-like protein 7 
 mtr-u.5   25502014   squamosa promoter-binding-like protein 13A 
 mtr-u.5   25502503   squamosa promoter-binding protein 1 
 ppo-u.5   7469559   squamosa promoter-binding protein 1 
 ath-u.5   SPL13B   Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 
 ath-u.5   AT1G69170   Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 
 ath-u.5   SPL4   squamosa promoter binding protein-like 4 
 vvi-u.5   100257602   squamosa promoter-binding-like protein 3 
 vvi-u.5   100250271   squamosa promoter-binding protein 1 
 vvi-u.5   100261045   squamosa promoter-binding-like protein 13A 
 sly-u.5   SBP3   squamosa promoter binding-like protein 3 
 sly-u.5   101250753   squamosa promoter-binding-like protein 9 
 sly-u.5   SPL-CNR   SQUAMOSA promoter binding protein-like 
 osa-u.5   4345998   squamosa promoter-binding-like protein 14 
 osa-u.5   4346133   squamosa promoter-binding-like protein 16 
 osa-u.5   4337258   squamosa promoter-binding-like protein 8 
 zma-u.5   not1   neighbor of tga1 
 zma-u.5   103656018   squamosa promoter-binding-like protein 11 
 zma-u.5   sbp3   SBP-transcription factor 3 

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Top 50 coexpressed genes to SPL9C (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SPL9C (gma-u.5 coexpression data)

CoexMap"100780949"


gmaSPL9C | Entrez gene ID : 100780949      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 3 1 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (3517 genes)  IEA  
Protein XP_003520534.1 [sequence] [blastp]
XP_006576852.1 [sequence] [blastp]
XP_014629260.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_003520534.1)
nucl 10  (predict for XP_006576852.1)
nucl 10  (predict for XP_014629260.1)
Subcellular
localization
TargetP
chlo 7,  other 4  (predict for XP_003520534.1)
chlo 7,  other 4  (predict for XP_006576852.1)
other 6  (predict for XP_014629260.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
SPL9C

.
gma-r.7
for
SPL9C

.
gma-u.5
for
100802206

.
gma-u.5
for
100805328

.
gma-u.5
for
100806582

.
mtr-u.5
for
25499846

.
mtr-u.5
for
25502014

.
mtr-u.5
for
25502503

.
ppo-u.5
for
7469559

.
ath-u.5
for
SPL13B

.
ath-u.5
for
AT1G69170

.
ath-u.5
for
SPL4

.
vvi-u.5
for
100257602

.
vvi-u.5
for
100250271

.
vvi-u.5
for
100261045

.
sly-u.5
for
SBP3

.
sly-u.5
for
101250753

.
sly-u.5
for
SPL-CNR

.
osa-u.5
for
4345998

.
osa-u.5
for
4346133

.
osa-u.5
for
4337258

.
zma-u.5
for
not1

.
zma-u.5
for
103656018

.
zma-u.5
for
sbp3

.


Ortholog ID: 89
Species ath gma sly sly osa osa zma zma bra vvi vvi ppo ppo mtr tae hvu hvu ghi ghi bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol SPL4 LOC100305703 LOC101266455 SPL-CNR LOC4328461 LOC4346133 sbp23 LOC103650833 LOC103868453 LOC100253723 LOC100257602 LOC18103048 LOC7454733 LOC25502503 LOC123121932 LOC123407106 LOC123445251 LOC107924238 LOC107923989 LOC106370056 CHLRE_07g345050v5 CHLRE_02g104700v5 LOC8060951 LOC8064025 LOC102591509 LOC102581816 LOC102628358 LOC102620002 LOC100841788 LOC100824643 LOC142161672 LOC107811347
Function* squamosa promoter binding protein-like 4 squamosa promoter-binding-like protein 3 squamosa promoter-binding-like protein 8 SQUAMOSA promoter binding protein-like squamosa promoter-binding-like protein 4 squamosa promoter-binding-like protein 16 SBP-transcription factor 23 squamosa promoter-binding-like protein 2 squamosa promoter-binding-like protein 5 promoter-binding protein SPL9 squamosa promoter-binding-like protein 3 squamosa promoter-binding-like protein 3 squamosa promoter-binding-like protein 13A squamosa promoter-binding protein 1 squamosa promoter-binding-like protein 17 squamosa promoter-binding-like protein 17 squamosa promoter-binding-like protein 2 squamosa promoter-binding-like protein 13A squamosa promoter-binding-like protein 8 squamosa promoter-binding-like protein 8 uncharacterized protein uncharacterized protein teosinte glume architecture 1 squamosa promoter-binding-like protein 14 squamosa promoter-binding-like protein 8 squamosa promoter-binding protein 1-like squamosa promoter-binding-like protein 7 teosinte glume architecture 1-like squamosa promoter-binding-like protein 8 squamosa promoter-binding-like protein 17 squamosa promoter-binding-like protein 8 squamosa promoter-binding protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 3
osa00480 Glutathione metabolism 3
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 5
vvi04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 6
ppo00592 alpha-Linolenic acid metabolism 2
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00240 Pyrimidine metabolism 2
ghi00760 Nicotinate and nicotinamide metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00030 Pentose phosphate pathway 5
bna01200 Carbon metabolism 5
bna00073 Cutin, suberine and wax biosynthesis 4
bna00270 Cysteine and methionine metabolism 2
bna00062 Fatty acid elongation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03082 ATP-dependent chromatin remodeling 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00561 Glycerolipid metabolism 2
cit00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00073 Cutin, suberine and wax biosynthesis 3
nta00511 Other glycan degradation 2
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841749 100305703 101266455 101256245 4328461 4346133 100217104 103650833 103868453 100253723 100257602 18103048 7454733 25502503 123121932 123407106 123445251 107924238 107923989 106370056 5718132 5725317 8060951 8064025 102591509 102581816 102628358 102620002 100841788 100824643 142161672 107811347
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