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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100781066   ubiquitin fusion degradation protein 1 homolog 
 gma-r.7   100781066   ubiquitin fusion degradation protein 1 homolog 
 gma-u.5   100795133   ubiquitin fusion degradation protein 1 homolog 
 gma-u.5   100803896   ubiquitin fusion degradation protein 1 homolog 
 gma-u.5   100799569   ubiquitin fusion degradation protein 1 homolog 
 mtr-u.5   11406565   ubiquitin fusion degradation protein 1 homolog 
 ppo-u.5   7494294   uncharacterized LOC7494294 
 ppo-u.5   7485696   uncharacterized LOC7485696 
 ath-u.5   UFD1   ubiquitin fusion degradation 1 
 ath-u.5   AT2G29070   Ubiquitin fusion degradation UFD1 family protein 
 ath-u.5   AT4G38930   Ubiquitin fusion degradation UFD1 family protein 
 vvi-u.5   100258971   uncharacterized LOC100258971 
 sly-u.5   101248524   ubiquitin fusion degradation protein 1 homolog 
 osa-u.5   4336742   uncharacterized LOC4336742 
 osa-u.5   4328514   ubiquitin fusion degradation protein 1 homolog 
 zma-u.5   100282805   uncharacterized LOC100282805 
 zma-u.5   100282176   uncharacterized LOC100282176 

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Top 50 coexpressed genes to 100781066 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100781066 (gma-u.5 coexpression data)

CoexMap"100781066"


gmaLOC100781066 | Entrez gene ID : 100781066      
Species gma mtr ppo ath vvi sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 5 1 2 3 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx04141 [list] [network] Protein processing in endoplasmic reticulum (375 genes)
GO BP
GO CC
GO:0034098 [list] [network] VCP-NPL4-UFD1 AAA ATPase complex  (22 genes)  IEA  
GO MF
GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding  (52 genes)  IEA  
Protein NP_001276130.2 [sequence] [blastp]
NP_001401575.1 [sequence] [blastp]
XP_014633832.1 [sequence] [blastp]
XP_040873541.1 [sequence] [blastp]
XP_040873542.1 [sequence] [blastp]
XP_040873543.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cysk 4  (predict for NP_001276130.2)
nucl 5,  cysk 4  (predict for NP_001401575.1)
nucl 5,  cysk 4  (predict for XP_014633832.1)
nucl 5,  cysk 4  (predict for XP_040873541.1)
nucl 5,  cysk 4  (predict for XP_040873542.1)
nucl 5,  cysk 4  (predict for XP_040873543.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001276130.2)
other 7  (predict for NP_001401575.1)
other 7  (predict for XP_014633832.1)
other 7  (predict for XP_040873541.1)
other 7  (predict for XP_040873542.1)
other 7  (predict for XP_040873543.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100781066
gma-r.7
for
100781066
gma-u.5
for
100795133
gma-u.5
for
100803896
gma-u.5
for
100799569
mtr-u.5
for
11406565
ppo-u.5
for
7494294
ppo-u.5
for
7485696
ath-u.5
for
UFD1
ath-u.5
for
AT2G29070
ath-u.5
for
AT4G38930
vvi-u.5
for
100258971
sly-u.5
for
101248524
osa-u.5
for
4336742
osa-u.5
for
4328514
zma-u.5
for
100282805
zma-u.5
for
100282176


Ortholog ID: 2383
Species gma gma ppo ppo ath ath bra bra vvi ghi ghi bna bna cit sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi bdi cre
Symbol LOC100781066 LOC100803896 LOC7485696 LOC7494294 UFD1 AT2G29070 LOC103864938 LOC103864264 LOC100258971 LOC107949091 LOC107902026 LOC106446356 LOC106420772 LOC102610628 LOC101248524 LOC102577706 LOC102601939 LOC107774986 LOC107786277 LOC4328514 LOC4336742 LOC100282176 LOC100282805 LOC123136537 LOC123132470 LOC123427440 LOC123402228 LOC8077631 LOC100841813 CHLRE_14g613350v5
Function* ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog uncharacterized LOC7485696 uncharacterized LOC7494294 ubiquitin fusion degradation 1 Ubiquitin fusion degradation UFD1 family protein ubiquitin fusion degradation protein 1 homolog ubiquitin recognition factor in ER-associated degradation protein 1 uncharacterized LOC100258971 ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog ubiquitin recognition factor in ER-associated degradation protein 1 ubiquitin recognition factor in ER-associated degradation protein 1 uncharacterized LOC102610628 ubiquitin fusion degradation protein 1 homolog ubiquitin fusion-degradation protein-like ubiquitin fusion degradation protein 1 homolog uncharacterized LOC107774986 uncharacterized LOC107786277 ubiquitin fusion degradation protein 1 homolog uncharacterized LOC4336742 uncharacterized LOC100282176 uncharacterized LOC100282805 ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
gma03082 ATP-dependent chromatin remodeling 2
gma03040 Spliceosome 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
ppo04146 Peroxisome 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 9
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 4
ath04141 Protein processing in endoplasmic reticulum 4
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 4
bra04120 Ubiquitin mediated proteolysis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 3
vvi04120 Ubiquitin mediated proteolysis 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 4
ghi00380 Tryptophan metabolism 2
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 4
bna03250 Viral life cycle - HIV-1 2
bna03272 Virion - Hepatitis viruses 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 4
bna03250 Viral life cycle - HIV-1 2
bna03272 Virion - Hepatitis viruses 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 10
cit01200 Carbon metabolism 3
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 5
sot00071 Fatty acid degradation 5
sot00592 alpha-Linolenic acid metabolism 5
sot01212 Fatty acid metabolism 5
sot04146 Peroxisome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 4
sot04141 Protein processing in endoplasmic reticulum 3
sot00592 alpha-Linolenic acid metabolism 2
sot04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 6
nta03420 Nucleotide excision repair 2
nta00900 Terpenoid backbone biosynthesis 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 6
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma04120 Ubiquitin mediated proteolysis 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 4
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
tae04141 Protein processing in endoplasmic reticulum 3
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03013 Nucleocytoplasmic transport 2
hvu03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi04144 Endocytosis 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
bdi04144 Endocytosis 2
bdi04145 Phagosome 2
bdi04148 Efferocytosis 2
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 4
cre03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100781066 100803896 7485696 7494294 816666 817455 103864938 103864264 100258971 107949091 107902026 106446356 106420772 102610628 101248524 102577706 102601939 107774986 107786277 4328514 4336742 100282176 100282805 123136537 123132470 123427440 123402228 8077631 100841813 5724541
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