ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100781376	60S ribosomal protein L18a-like protein
gma-r.7	100781376	60S ribosomal protein L18a-like protein
gma-m.5	100781376	60S ribosomal protein L18a-like protein
gma-u.5	100810998	60S ribosomal protein L18a-like protein
mtr-u.5	25487121	60S ribosomal protein L18a-like protein
ppo-u.5	7491359	60S ribosomal protein L18a-like protein
ath-u.5	AT1G17080	Ribosomal protein L18ae family
ath-u.5	AT1G53560	Ribosomal protein L18ae family
bra-r.6	103871119	60S ribosomal protein L18a-like protein
bra-r.6	103835974	60S ribosomal protein L18a-like protein
vvi-u.5	100260767	large ribosomal subunit protein eL20z
ghi-r.1	121203651	60S ribosomal protein L18a-like protein
ghi-r.1	107960258	60S ribosomal protein L18a-like protein
ghi-r.1	107955613	60S ribosomal protein L18a-like protein
bna-r.1	106434929	60S ribosomal protein L18a-like protein
bna-r.1	106345935	60S ribosomal protein L18a-like protein
bna-r.1	106387605	60S ribosomal protein L18a-like protein
sly-u.5	101264350	large ribosomal subunit protein eL20z
sly-u.5	101244058	large ribosomal subunit protein eL20z
sly-u.5	101244447	60S ribosomal protein L18a-like protein
sot-r.1	102585144	60S ribosomal protein L18a-like protein
sot-r.1	102586609	60S ribosomal protein L18a-like protein
sot-r.1	102601255	60S ribosomal protein L18a-like protein
nta-r.1	107831710	large ribosomal subunit protein eL20z
nta-r.1	107828802	large ribosomal subunit protein eL20z-like
nta-r.1	107825033	large ribosomal subunit protein eL20z
osa-u.5	4326318	large ribosomal subunit protein eL20z
osa-u.5	4339624	large ribosomal subunit protein eL20z
zma-u.5	100273370	60S ribosomal protein L18a-like
zma-u.5	100281992	uncharacterized LOC100281992
zma-u.5	100284168	uncharacterized LOC100284168
tae-r.2	123052030	60S ribosomal protein L18a-like protein
tae-r.2	123060927	60S ribosomal protein L18a-like protein
tae-r.2	123061719	60S ribosomal protein L18a-like protein
hvu-r.1	123426240	serine/arginine repetitive matrix protein 1-like
hvu-r.1	123444056	60S ribosomal protein L18a-like protein
hvu-r.1	123443340	60S ribosomal protein L18a-like protein
sbi-r.1	8060149	60S ribosomal protein L18a-like protein
sbi-r.1	110434018	60S ribosomal protein L18a-like protein
sbi-r.1	8074600	60S ribosomal protein L18a-like protein
bdi-r.1	104582589	60S ribosomal protein L18a-like protein

Top 50 coexpressed genes to 100781376 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100781376 (gma-u.5 coexpression data)

CoexMap"100781376"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx03010 [list] [network] Ribosome (1072 genes)

GO BP

GO CC

GO MF

Protein

XP_003543169.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, cyto 1, nucl 1, mito 1, vacu 1, cyto_pero 1, cyto_E.R. 1

(predict for XP_003543169.1)

Subcellular
localization
TargetP

other 9

(predict for XP_003543169.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100781376	gma-r.7 for 100781376	gma-m.5 for 100781376	gma-u.5 for 100810998	mtr-u.5 for 25487121	ppo-u.5 for 7491359	ath-u.5 for AT1G17080	ath-u.5 for AT1G53560	bra-r.6 for 103871119	bra-r.6 for 103835974	vvi-u.5 for 100260767	ghi-r.1 for 121203651	ghi-r.1 for 107960258	ghi-r.1 for 107955613	bna-r.1 for 106434929	bna-r.1 for 106345935	bna-r.1 for 106387605	sly-u.5 for 101264350	sly-u.5 for 101244058	sly-u.5 for 101244447	sot-r.1 for 102585144	sot-r.1 for 102586609	sot-r.1 for 102601255	nta-r.1 for 107831710	nta-r.1 for 107828802	nta-r.1 for 107825033	osa-u.5 for 4326318	osa-u.5 for 4339624	zma-u.5 for 100273370	zma-u.5 for 100281992	zma-u.5 for 100284168	tae-r.2 for 123052030	tae-r.2 for 123060927	tae-r.2 for 123061719	hvu-r.1 for 123426240	hvu-r.1 for 123444056	hvu-r.1 for 123443340	sbi-r.1 for 8060149	sbi-r.1 for 110434018	sbi-r.1 for 8074600	bdi-r.1 for 104582589

Ortholog

Ortholog ID: 2518

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

60S ribosomal protein L18a-like protein

Ribosomal protein L18ae family

60S ribosomal protein L18a-like protein

large ribosomal subunit protein eL20z

60S ribosomal protein L18a-like protein

large ribosomal subunit protein eL20z

60S ribosomal protein L18a-like protein

large ribosomal subunit protein eL20z-like

large ribosomal subunit protein eL20z

large ribosomal subunit protein eL20z-like

large ribosomal subunit protein eL20z

uncharacterized LOC100281992

uncharacterized LOC100284168

uncharacterized LOC103636155

60S ribosomal protein L18a-like protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	4
ath04144	Endocytosis	3
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	4
ath04142	Lysosome	4
ath04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	4
bra00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04130	SNARE interactions in vesicular transport	3
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3
bna03010	Ribosome	2
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3
bna03010	Ribosome	2
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	3
sly04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	3
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	3
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04517	IgSF CAM signaling	2
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	4
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	2
zma00640	Propanoate metabolism	2
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	2
zma04145	Phagosome	2
zma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04145	Phagosome	4
zma04144	Endocytosis	3
zma04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00280	Valine, leucine and isoleucine degradation	5
hvu03050	Proteasome	2
hvu04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	5
sbi03250	Viral life cycle - HIV-1	2
sbi03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03250	Viral life cycle - HIV-1	2
sbi03272	Virion - Hepatitis viruses	2
sbi04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

100781376

100810998

25487121

7491359

838278

841791

103871119

103835974

100260767

121203651

107960258

107955613

106434929

106415504

106451484

101264350

101244058

101244447

102585144

102586609

102601255

107828802

107825033

107790088

4326318

4339624

100281992

100284168

103636155

123069487

123146038

123183121

123444056

123443340

123450430

8060149

110434018

8074600

104582589

The preparation time of this page was 0.2 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cit	cre
Paralog	4	1	1	2	2	1	3	3	3	3	3	2	3	3	3	3	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100781376 (gma-u.5 coexpression data)

Top 50 enrichment test to 100781376 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**