ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	NF-YC02	nuclear factor Y transcription factor family protein
gma-r.7	NF-YC02	nuclear factor Y transcription factor family protein
gma-u.5	NF-YC07	nuclear factor Y transcription factor family protein
gma-u.5	NF-YC06	nuclear factor Y transcription factor family protein
gma-u.5	NF-YC14	nuclear factor Y transcription factor
mtr-u.5	11429705	nuclear transcription factor Y subunit C-1
mtr-u.5	120578221	nuclear transcription factor Y subunit C-2
mtr-u.5	11410747	nuclear transcription factor Y subunit C-3
ppo-u.5	7454560	nuclear transcription factor Y subunit C-4
ppo-u.5	7454724	nuclear transcription factor Y subunit C-1
ath-u.5	NF-YC1	nuclear factor Y, subunit C1
ath-u.5	NF-YC4	nuclear factor Y, subunit C4
bra-r.6	103843367	nuclear transcription factor Y subunit C-9
bra-r.6	103830155	nuclear transcription factor Y subunit C-2
vvi-u.5	100259532	nuclear transcription factor Y subunit C-1
vvi-u.5	100266507	nuclear transcription factor Y subunit C-3
vvi-u.5	100258035	nuclear transcription factor Y subunit C-9
ghi-r.1	121203061	nuclear transcription factor Y subunit C-2
ghi-r.1	107894416	nuclear transcription factor Y subunit C-9
bna-r.1	125610291	nuclear transcription factor Y subunit C-1-like
bna-r.1	106345689	nuclear transcription factor Y subunit C-9
bna-r.1	106346297	nuclear transcription factor Y subunit C-9
cit-r.1	102609372	nuclear transcription factor Y subunit C-9
cit-r.1	102617055	nuclear transcription factor Y subunit C-1
cit-r.1	102628121	nuclear transcription factor Y subunit C-2
sly-u.5	101247122	nuclear transcription factor Y subunit C-1
sly-u.5	CIP2b	CONSTANS interacting protein 2b
sly-u.5	CIP2a	CONSTANS interacting protein 2a
sot-r.1	102587685	nuclear transcription factor Y subunit C-9-like
sot-r.1	102597101	nuclear transcription factor Y subunit C-1-like
sot-r.1	102603380	nuclear transcription factor Y subunit C-1-like
nta-r.1	107765408	nuclear transcription factor Y subunit C-1
nta-r.1	107797519	nuclear transcription factor Y subunit C-1
nta-r.1	107801701	nuclear transcription factor Y subunit C-9-like
osa-u.5	4347391	nuclear transcription factor Y subunit C-6-like
osa-u.5	9266204	nuclear transcription factor Y subunit C-2-like
osa-u.5	4328444	nuclear transcription factor Y subunit C-4-like
zma-u.5	100277570	Nuclear transcription factor Y subunit C-9
zma-u.5	100273685	nuclear transcription factor Y subunit C-2
zma-u.5	100281601	nuclear transcription factor Y subunit C-1
tae-r.2	123098047	nuclear transcription factor Y subunit C-2
tae-r.2	123112331	nuclear transcription factor Y subunit C-6
tae-r.2	123136650	nuclear transcription factor Y subunit C-4
hvu-r.1	123408918	nuclear transcription factor Y subunit C-6-like
hvu-r.1	123401541	nuclear transcription factor Y subunit C-4-like
hvu-r.1	123399206	nuclear transcription factor Y subunit C-6-like
sbi-r.1	8067022	nuclear transcription factor Y subunit C-6
sbi-r.1	110431645	nuclear transcription factor Y subunit C-2-like
sbi-r.1	8071112	nuclear transcription factor Y subunit C-4
bdi-r.1	100832359	nuclear transcription factor Y subunit C-6
bdi-r.1	100836803	nuclear transcription factor Y subunit C-2
bdi-r.1	100838294	nuclear transcription factor Y subunit C-4
cre-r.1	CHLRE_12g556400v5	uncharacterized protein

Top 50 coexpressed genes to NF-YC02 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to NF-YC02 (gma-u.5 coexpression data)

CoexMap"100782754"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(844 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0046982 [list] [network] protein heterodimerization activity	(167 genes)	IEA
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(449 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(557 genes)	IEA

Protein

XP_014629756.1 [sequence] [blastp]

Subcellular
localization
wolf

cysk 8, nucl 1, cyto 1, cyto_nucl 1, E.R._vacu 1

(predict for XP_014629756.1)

Subcellular
localization
TargetP

other 8

(predict for XP_014629756.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for NF-YC02	gma-r.7 for NF-YC02	gma-u.5 for NF-YC07	gma-u.5 for NF-YC06	gma-u.5 for NF-YC14	mtr-u.5 for 11429705	mtr-u.5 for 120578221	mtr-u.5 for 11410747	ppo-u.5 for 7454560	ppo-u.5 for 7454724	ath-u.5 for NF-YC1	ath-u.5 for NF-YC4	bra-r.6 for 103843367	bra-r.6 for 103830155	vvi-u.5 for 100259532	vvi-u.5 for 100266507	vvi-u.5 for 100258035	ghi-r.1 for 121203061	ghi-r.1 for 107894416	bna-r.1 for 125610291	bna-r.1 for 106345689	bna-r.1 for 106346297	cit-r.1 for 102609372	cit-r.1 for 102617055	cit-r.1 for 102628121	sly-u.5 for 101247122	sly-u.5 for CIP2b	sly-u.5 for CIP2a	sot-r.1 for 102587685	sot-r.1 for 102597101	sot-r.1 for 102603380	nta-r.1 for 107765408	nta-r.1 for 107797519	nta-r.1 for 107801701	osa-u.5 for 4347391	osa-u.5 for 9266204	osa-u.5 for 4328444	zma-u.5 for 100277570	zma-u.5 for 100273685	zma-u.5 for 100281601	tae-r.2 for 123098047	tae-r.2 for 123112331	tae-r.2 for 123136650	hvu-r.1 for 123408918	hvu-r.1 for 123401541	hvu-r.1 for 123399206	sbi-r.1 for 8067022	sbi-r.1 for 110431645	sbi-r.1 for 8071112	bdi-r.1 for 100832359	bdi-r.1 for 100836803	bdi-r.1 for 100838294	cre-r.1 for CHLRE_12g556400v5

Ortholog

Ortholog ID: 623

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

NF-YC07

NF-YC06

NF-YC04

NF-YC4

NF-YC9

CIP2b

CIP2a

Function^*

nuclear factor Y transcription factor family protein

nuclear transcription factor Y subunit C-1

nuclear transcription factor Y subunit C-3

nuclear transcription factor Y subunit C-1

nuclear transcription factor Y subunit C-9

nuclear factor Y, subunit C4

nuclear factor Y, subunit C9

nuclear transcription factor Y subunit C-9

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-1

nuclear transcription factor Y subunit C-3

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-9

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-4

nuclear transcription factor Y subunit C-1-like

nuclear transcription factor Y subunit C-9

nuclear transcription factor Y subunit C-1

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-1

CONSTANS interacting protein 2b

CONSTANS interacting protein 2a

nuclear transcription factor Y subunit C-9-like

nuclear transcription factor Y subunit C-1-like

uncharacterized LOC102577612

nuclear transcription factor Y subunit C-1

nuclear transcription factor Y subunit C-1-like

nuclear transcription factor Y subunit C-3

nuclear transcription factor Y subunit C-2-like

nuclear transcription factor Y subunit C-4-like

nuclear transcription factor Y subunit C-6-like

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-1

uncharacterized LOC100217109

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-6

nuclear transcription factor Y subunit C-4

nuclear transcription factor Y subunit C-6-like

nuclear transcription factor Y subunit C-2-like

nuclear transcription factor Y subunit C-6

nuclear transcription factor Y subunit C-4

nuclear transcription factor Y subunit C-6

nuclear transcription factor Y subunit C-4

nuclear transcription factor Y subunit C-6

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04814	Motor proteins	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo00860	Porphyrin metabolism	3
ppo01240	Biosynthesis of cofactors	3
ppo04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	2
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	9
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3
bra03083	Polycomb repressive complex	2
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	3
bra00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	4
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	2
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	2
bna00100	Steroid biosynthesis	2
bna04142	Lysosome	2
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00100	Steroid biosynthesis	2
bna04142	Lysosome	2
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2
zma04120	Ubiquitin mediated proteolysis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	3
zma00196	Photosynthesis - antenna proteins	2
zma00710	Carbon fixation by Calvin cycle	2
zma00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00460	Cyanoamino acid metabolism	3
tae00500	Starch and sucrose metabolism	3
tae00999	Biosynthesis of various plant secondary metabolites	3
tae00630	Glyoxylate and dicarboxylate metabolism	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	2
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	8
hvu00196	Photosynthesis - antenna proteins	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03083	Polycomb repressive complex	3
bdi04120	Ubiquitin mediated proteolysis	3
bdi04141	Protein processing in endoplasmic reticulum	3
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	2
bdi03410	Base excision repair	2
bdi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	2
cre03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

100776494

100796987

100818447

11429705

11410747

11429780

7454724

18102323

836466

837417

103843367

103830155

103873128

100259532

100266507

100243367

107920899

107939338

107887675

106353197

106406926

125610289

102609372

102617055

102628121

101247122

778249

778347

102587685

102603380

102577612

107797519

107820349

107832065

9266204

4341785

4345928

100273685

100281601

100217109

123092752

123167754

123162727

123408918

123399206

123449145

110431645

8055845

8061586

100832359

100840477

100842288

5719754

The preparation time of this page was 0.2 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	2	2	2	3	2	3	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to NF-YC02 (gma-u.5 coexpression data)

Top 50 enrichment test to NF-YC02 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**