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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100785835   26S proteasome non-ATPase regulatory subunit RPN12A-like 
 gma-r.7   100785835   26S proteasome non-ATPase regulatory subunit RPN12A-like 
 gma-m.5   100785835   26S proteasome non-ATPase regulatory subunit RPN12A-like 
 gma-u.5   100803720   26S proteasome non-ATPase regulatory subunit 8 homolog A 
 mtr-u.5   11438262   26S proteasome non-ATPase regulatory subunit 8 homolog A 
 ppo-u.5   7467064   26S proteasome non-ATPase regulatory subunit 8 homolog A 
 ppo-u.5   7465327   26S proteasome non-ATPase regulatory subunit 8 homolog A 
 ath-u.5   RPN12a   regulatory particle non-ATPase 12A 
 vvi-u.5   100258086   26S proteasome non-ATPase regulatory subunit 8 homolog A 
 sly-u.5   101249287   26S proteasome non-ATPase regulatory subunit 8 homolog A 
 osa-u.5   4343069   26S proteasome non-ATPase regulatory subunit 8 homolog A 
 zma-u.5   100282470   26S proteasome non-ATPase regulatory subunit 8 
 zma-u.5   100192879   26S proteasome non-ATPase regulatory subunit 8 

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Top 50 coexpressed genes to 100785835 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100785835 (gma-u.5 coexpression data)

CoexMap"100785835"


gmaLOC100785835 | Entrez gene ID : 100785835      
Species gma mtr ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 1 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03050 [list] [network] Proteasome (106 genes)
GO BP
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (267 genes)  IEA  
GO CC
GO:0008541 [list] [network] proteasome regulatory particle, lid subcomplex  (26 genes)  IEA  
GO:0005838 [list] [network] proteasome regulatory particle  (64 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1702 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
Protein NP_001241171.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 2,  mito 1,  chlo 1,  pero 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001241171.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001241171.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100785835

.
gma-r.7
for
100785835

.
gma-m.5
for
100785835

.
gma-u.5
for
100803720

.
mtr-u.5
for
11438262

.
ppo-u.5
for
7467064

.
ppo-u.5
for
7465327

.
ath-u.5
for
RPN12a

.
vvi-u.5
for
100258086

.
sly-u.5
for
101249287

.
osa-u.5
for
4343069

.
zma-u.5
for
100282470

.
zma-u.5
for
100192879

.


Ortholog ID: 4795
Species ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol RPN12a LOC100803720 LOC100785835 LOC101249287 LOC4343069 LOC100282470 LOC100192879 LOC103849699 LOC103838195 LOC100258086 LOC7467064 LOC7465327 LOC11438262 LOC123054337 LOC123088200 LOC123446899 LOC107928402 LOC107909070 LOC106349372 LOC125593406 CHLRE_17g708300v5 LOC8071182 LOC102603250 LOC102624217 LOC100836881 LOC100826516 LOC107762432 LOC107813385
Function* regulatory particle non-ATPase 12A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit RPN12A-like 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 26S proteasome non-ATPase regulatory subunit 8 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A-like uncharacterized protein 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A 26S proteasome non-ATPase regulatory subunit 8 homolog A-like 26S proteasome non-ATPase regulatory subunit 8 homolog A-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 9
gma04120 Ubiquitin mediated proteolysis 3
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 4
gma03040 Spliceosome 2
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 7
zma04141 Protein processing in endoplasmic reticulum 3
zma03013 Nucleocytoplasmic transport 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 12
zma00190 Oxidative phosphorylation 4
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 10
ppo00190 Oxidative phosphorylation 2
ppo04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 10
mtr03083 Polycomb repressive complex 2
mtr04120 Ubiquitin mediated proteolysis 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 6
tae03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 7
hvu04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 4
bna03010 Ribosome 2
bna00280 Valine, leucine and isoleucine degradation 2
bna00410 beta-Alanine metabolism 2
bna00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 10
cre03420 Nucleotide excision repair 2
cre04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 12
sbi03015 mRNA surveillance pathway 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 10
bdi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 11
nta00010 Glycolysis / Gluconeogenesis 2
nta00260 Glycine, serine and threonine metabolism 2
nta01200 Carbon metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 12
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842760 100803720 100785835 101249287 4343069 100282470 100192879 103849699 103838195 100258086 7467064 7465327 11438262 123054337 123088200 123446899 107928402 107909070 106349372 125593406 5717175 8071182 102603250 102624217 100836881 100826516 107762432 107813385
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