ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100786944	deSI-like protein At4g17486
gma-r.7	100786944	deSI-like protein At4g17486
gma-u.5	100814440	deSI-like protein At4g17486
mtr-u.5	25496435	uncharacterized LOC25496435
mtr-u.5	11428141	deubiquitinase DESI2
ppo-u.5	7487423	uncharacterized LOC7487423
ppo-u.5	112324616	uncharacterized LOC112324616
ath-u.5	AT4G25660	PPPDE putative thiol peptidase family protein
ath-u.5	AT4G25680	PPPDE putative thiol peptidase family protein
bra-r.6	103863388	deSI-like protein At4g17486
bra-r.6	103834858	deSI-like protein At4g17486
bra-r.6	103863413	deSI-like protein At4g17486
vvi-u.5	100255969	deSI-like protein At4g17486
ghi-r.1	107917845	uncharacterized LOC107917845
ghi-r.1	107952062	deSI-like protein At4g17486
ghi-r.1	107951282	deSI-like protein At4g17486
bna-r.1	106347105	deSI-like protein At4g17486
bna-r.1	106347104	deSI-like protein At4g17486
bna-r.1	106361339	deSI-like protein At4g17486
cit-r.1	102607017	hypothetical protein
sly-u.5	101266906	uncharacterized LOC101266906
sly-u.5	101248067	deSI-like protein At4g17486
sot-r.1	102590123	desumoylating isopeptidase 2-like
sot-r.1	102588654	deSI-like protein At4g17486
nta-r.1	107826115	uncharacterized LOC107826115
nta-r.1	107826117	uncharacterized LOC107826117
nta-r.1	107807163	deSI-like protein At4g17486
osa-u.5	4349227	uncharacterized LOC4349227
osa-u.5	4339870	uncharacterized LOC4339870
zma-u.5	103638177	DeSI-like protein
zma-u.5	100276728	uncharacterized LOC100276728
tae-r.2	123049170	deubiquitinase DESI2
tae-r.2	123125483	deubiquitinase DESI2
tae-r.2	123088503	uncharacterized LOC123088503
hvu-r.1	123410568	uncharacterized LOC123410568
hvu-r.1	123435506	deubiquitinase DESI2-like
sbi-r.1	8062875	deSI-like protein sdu1
bdi-r.1	100846937	desumoylating isopeptidase 2
bdi-r.1	100845322	desumoylating isopeptidase 2
cre-r.1	CHLRE_02g074600v5	uncharacterized protein

Top 50 coexpressed genes to 100786944 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100786944 (gma-u.5 coexpression data)

CoexMap"100786944"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016579 [list] [network] protein deubiquitination

(128 genes)

IEA

GO CC

GO MF

GO:0101005 [list] [network] deubiquitinase activity

(124 genes)

IEA

Protein

XP_014624574.1 [sequence] [blastp]
XP_040866511.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 1, cyto 1, extr 1, cysk 1, golg 1, chlo_mito 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_014624574.1)
nucl 6, chlo 2, cyto 2	(predict for XP_040866511.1)

Subcellular
localization
TargetP

other 9	(predict for XP_014624574.1)
other 7	(predict for XP_040866511.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100786944	gma-r.7 for 100786944	gma-u.5 for 100814440	mtr-u.5 for 25496435	mtr-u.5 for 11428141	ppo-u.5 for 7487423	ppo-u.5 for 112324616	ath-u.5 for AT4G25660	ath-u.5 for AT4G25680	bra-r.6 for 103863388	bra-r.6 for 103834858	bra-r.6 for 103863413	vvi-u.5 for 100255969	ghi-r.1 for 107917845	ghi-r.1 for 107952062	ghi-r.1 for 107951282	bna-r.1 for 106347105	bna-r.1 for 106347104	bna-r.1 for 106361339	cit-r.1 for 102607017	sly-u.5 for 101266906	sly-u.5 for 101248067	sot-r.1 for 102590123	sot-r.1 for 102588654	nta-r.1 for 107826115	nta-r.1 for 107826117	nta-r.1 for 107807163	osa-u.5 for 4349227	osa-u.5 for 4339870	zma-u.5 for 103638177	zma-u.5 for 100276728	tae-r.2 for 123049170	tae-r.2 for 123125483	tae-r.2 for 123088503	hvu-r.1 for 123410568	hvu-r.1 for 123435506	sbi-r.1 for 8062875	bdi-r.1 for 100846937	bdi-r.1 for 100845322	cre-r.1 for CHLRE_02g074600v5

Ortholog

Ortholog ID: 3365

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

deSI-like protein At4g17486

uncharacterized LOC25496435

deubiquitinase DESI2

uncharacterized LOC7487423

uncharacterized LOC112324616

PPPDE putative thiol peptidase family protein

deSI-like protein At4g17486

uncharacterized LOC107917845

deubiquitinase DESI2

uncharacterized LOC107890748

deSI-like protein At4g17486

hypothetical protein

uncharacterized LOC101266906

deSI-like protein At4g17486

desumoylating isopeptidase 2-like

deSI-like protein At4g17486

uncharacterized LOC107826115

deSI-like protein At4g17486

uncharacterized LOC4349227

uncharacterized LOC4339870

DeSI-like protein

uncharacterized LOC100276728

deubiquitinase DESI2

uncharacterized LOC123088503

uncharacterized LOC123168118

uncharacterized LOC123410568

deubiquitinase DESI2-like

deSI-like protein sdu1

desumoylating isopeptidase 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	6
mtr03083	Polycomb repressive complex	4
mtr04120	Ubiquitin mediated proteolysis	2
mtr04141	Protein processing in endoplasmic reticulum	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	4
bra04142	Lysosome	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04145	Phagosome	2
bra04517	IgSF CAM signaling	2
bra04814	Motor proteins	2
bra00541	Biosynthesis of various nucleotide sugars	2
bra01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	3
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04130	SNARE interactions in vesicular transport	6
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna02010	ABC transporters	4
bna00240	Pyrimidine metabolism	2
bna00760	Nicotinate and nicotinamide metabolism	2
bna01232	Nucleotide metabolism	2
bna00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00564	Glycerophospholipid metabolism	2
sly04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	7
nta04145	Phagosome	7
nta00190	Oxidative phosphorylation	5
nta04142	Lysosome	5
nta00510	N-Glycan biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	5
nta04142	Lysosome	5
nta04145	Phagosome	5
nta00510	N-Glycan biosynthesis	2
nta00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	4
tae04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae00562	Inositol phosphate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	2
sbi04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

100786944

100814440

25496435

11428141

7487423

112324616

828671

828673

103863388

103834858

103863413

100255969

107917845

107908222

107890748

106347105

106347104

106442856

102607017

101266906

101248067

102590123

102588654

107826115

107807163

107810740

4349227

4339870

103638177

100276728

123049170

123088503

123168118

123410568

123435506

8062875

100846937

100845322

5727182

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Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	2	2	3	1	3	3	1	2	2	3	2	2	3	2	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100786944 (gma-u.5 coexpression data)

Top 50 enrichment test to 100786944 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**