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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100788428   geranylgeranyl transferase type-1 subunit beta 
 gma-r.7   100788428   geranylgeranyl transferase type-1 subunit beta 
 gma-m.5   100788428   geranylgeranyl transferase type-1 subunit beta 
 gma-u.5   100783982   geranylgeranyl transferase type-1 subunit beta 
 mtr-u.5   11438315   geranylgeranyl transferase type-1 subunit beta 
 ppo-u.5   18102725   geranylgeranyl transferase type-1 subunit beta 
 ppo-u.5   7457937   geranylgeranyl transferase type-1 subunit beta 
 ath-u.5   PGGT-I   Prenyltransferase family protein 
 bra-r.6   103867030   geranylgeranyl transferase type-1 subunit beta 
 vvi-u.5   100241042   geranylgeranyl transferase type-1 subunit beta 
 ghi-r.1   107938172   geranylgeranyl transferase type-1 subunit beta 
 bna-r.1   106451003   geranylgeranyl transferase type-1 subunit beta 
 bna-r.1   106390194   geranylgeranyl transferase type-1 subunit beta 
 cit-r.1   102616419   geranylgeranyl transferase type-1 subunit beta 
 sly-u.5   101263319   geranylgeranyl transferase type-1 subunit beta 
 sot-r.1   102580719   geranylgeranyl transferase type-1 subunit beta 
 nta-r.1   107784135   geranylgeranyl transferase type-1 subunit beta 
 nta-r.1   107777234   geranylgeranyl transferase type-1 subunit beta 
 osa-u.5   4324517   geranylgeranyl transferase type-1 subunit beta 
 zma-u.5   111921942   PAS2 
 tae-r.2   123077158   geranylgeranyl transferase type-1 subunit beta 
 tae-r.2   123068634   geranylgeranyl transferase type-1 subunit beta 
 tae-r.2   123060150   geranylgeranyl transferase type-1 subunit beta 
 hvu-r.1   123442696   geranylgeranyl transferase type-1 subunit beta 
 bdi-r.1   100846899   geranylgeranyl transferase type-1 subunit beta 

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Top 50 coexpressed genes to 100788428 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100788428 (gma-u.5 coexpression data)

CoexMap"100788428"


gmaLOC100788428 | Entrez gene ID : 100788428      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu bdi cre sbi
Paralog 4 1 2 1 1 1 1 2 1 1 1 2 1 1 3 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0018344 [list] [network] protein geranylgeranylation  (11 genes)  IEA  
GO CC
GO:0005953 [list] [network] CAAX-protein geranylgeranyltransferase complex  (4 genes)  IEA  
GO MF
GO:0004662 [list] [network] CAAX-protein geranylgeranyltransferase activity  (4 genes)  IEA  
Protein XP_003552693.1 [sequence] [blastp]
XP_025982575.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 3  (predict for XP_003552693.1)
cyto 5,  nucl 4  (predict for XP_025982575.1)
Subcellular
localization
TargetP
other 8  (predict for XP_003552693.1)
other 8  (predict for XP_025982575.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100788428
gma-r.7
for
100788428
gma-m.5
for
100788428
gma-u.5
for
100783982
mtr-u.5
for
11438315
ppo-u.5
for
18102725
ppo-u.5
for
7457937
ath-u.5
for
PGGT-I
bra-r.6
for
103867030
vvi-u.5
for
100241042
ghi-r.1
for
107938172
bna-r.1
for
106451003
bna-r.1
for
106390194
cit-r.1
for
102616419
sly-u.5
for
101263319
sot-r.1
for
102580719
nta-r.1
for
107784135
nta-r.1
for
107777234
osa-u.5
for
4324517
zma-u.5
for
111921942
tae-r.2
for
123077158
tae-r.2
for
123068634
tae-r.2
for
123060150
hvu-r.1
for
123442696
bdi-r.1
for
100846899


Ortholog ID: 11268
Species gma gma mtr ppo ppo ath bra vvi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu bdi
Symbol LOC100788428 LOC100783982 LOC11438315 LOC18102725 LOC7457937 PGGT-I LOC103867030 LOC100241042 LOC107938172 LOC106451003 LOC106390194 LOC102616419 LOC101263319 LOC102580719 LOC107784135 LOC107777234 LOC4324517 LOC111921942 LOC123077158 LOC123068634 LOC123060150 LOC123442696 LOC100846899
Function* geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta Prenyltransferase family protein geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta PAS2 geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta geranylgeranyl transferase type-1 subunit beta
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00460 Cyanoamino acid metabolism 2
gma00500 Starch and sucrose metabolism 2
gma00999 Biosynthesis of various plant secondary metabolites 2
gma00531 Glycosaminoglycan degradation 2
gma00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00460 Cyanoamino acid metabolism 2
gma00500 Starch and sucrose metabolism 2
gma00999 Biosynthesis of various plant secondary metabolites 2
gma00260 Glycine, serine and threonine metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr01200 Carbon metabolism 2
mtr00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04517 IgSF CAM signaling 2
bra05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 4
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 7
bna01200 Carbon metabolism 7
bna00010 Glycolysis / Gluconeogenesis 6
bna01230 Biosynthesis of amino acids 6
bna00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 6
bna00010 Glycolysis / Gluconeogenesis 4
bna00620 Pyruvate metabolism 4
bna01200 Carbon metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 2
cit00561 Glycerolipid metabolism 2
cit03008 Ribosome biogenesis in eukaryotes 2
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00510 N-Glycan biosynthesis 3
sly00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00513 Various types of N-glycan biosynthesis 4
nta00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00513 Various types of N-glycan biosynthesis 4
nta00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00062 Fatty acid elongation 6
osa01212 Fatty acid metabolism 4
osa01040 Biosynthesis of unsaturated fatty acids 3
osa04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 3
tae00730 Thiamine metabolism 3
tae01232 Nucleotide metabolism 3
tae01240 Biosynthesis of cofactors 3
tae00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 3
tae00730 Thiamine metabolism 3
tae01232 Nucleotide metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
hvu00600 Sphingolipid metabolism 2
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
bdi04136 Autophagy - other 2
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100788428 100783982 11438315 18102725 7457937 818540 103867030 100241042 107938172 106451003 106390194 102616419 101263319 102580719 107784135 107777234 4324517 111921942 123077158 123068634 123060150 123442696 100846899
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