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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100783205   nijmegen breakage syndrome 1 protein 
 mtr-u.5   11436414   nijmegen breakage syndrome 1 protein 
 ppo-u.5   7474071   nibrin homolog 
 ath-u.5   NBS1   nijmegen breakage syndrome 1 
 vvi-u.5   100853048   nibrin homolog 
 sly-u.5   101261187   nibrin homolog 
 osa-u.5   4348951   nijmegen breakage syndrome 1 protein-like 
 zma-u.5   100501841   Nijmegen breakage syndrome 1 protein 

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Top 50 coexpressed genes to 100783205 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100783205 (gma-u.5 coexpression data)

CoexMap"100789459"


gmaLOC100789459 | Entrez gene ID : 100789459    
Species gma mtr ppo ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03440 [list] [network] Homologous recombination (74 genes)
GO BP
GO:0007095 [list] [network] mitotic G2 DNA damage checkpoint signaling  (6 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (164 genes)  IEA  
GO CC
GO:0030870 [list] [network] Mre11 complex  (4 genes)  IEA  
GO MF
GO:0003684 [list] [network] damaged DNA binding  (116 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_040869298.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  chlo 1,  plas 1,  extr 1  (predict for XP_040869298.1)
Subcellular
localization
TargetP
other 8  (predict for XP_040869298.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100783205

.
mtr-u.5
for
11436414

.
ppo-u.5
for
7474071

.
ath-u.5
for
NBS1

.
vvi-u.5
for
100853048

.
sly-u.5
for
101261187

.
osa-u.5
for
4348951

.
zma-u.5
for
100501841

.


Ortholog ID: 10782
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol NBS1 LOC100783205 LOC101261187 LOC4348951 LOC100501841 LOC103870901 LOC100853048 LOC7474071 LOC11436414 LOC123181133 LOC123122050 LOC123431957 LOC107935715 LOC121210865 LOC125575232 LOC106453222 LOC8067124 LOC102581377 LOC102614559 LOC100824411 LOC107829397 LOC107779733
Function* nijmegen breakage syndrome 1 nijmegen breakage syndrome 1 protein nibrin homolog nijmegen breakage syndrome 1 protein-like Nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nibrin homolog nibrin homolog nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein-like nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nibrin homolog nijmegen breakage syndrome 1 protein nibrin homolog nibrin homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03440 Homologous recombination 2
bra04144 Endocytosis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 2
vvi03015 mRNA surveillance pathway 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae00770 Pantothenate and CoA biosynthesis 2
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03440 Homologous recombination 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821254 100783205 101261187 4348951 100501841 103870901 100853048 7474071 11436414 123181133 123122050 123431957 107935715 121210865 125575232 106453222 8067124 102581377 102614559 100824411 107829397 107779733
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