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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   NBS1   nijmegen breakage syndrome 1 
 ath-r.7   NBS1   nijmegen breakage syndrome 1 
 ath-m.9   NBS1   nijmegen breakage syndrome 1 
 ath-e.2   NBS1   nijmegen breakage syndrome 1 
 ath-m.4.bio   NBS1   nijmegen breakage syndrome 1 
 ath-m.4.hor   NBS1   nijmegen breakage syndrome 1 
 ath-m.4.lig   NBS1   nijmegen breakage syndrome 1 
 ath-m.4.str   NBS1   nijmegen breakage syndrome 1 
 ath-m.4.tis   NBS1   nijmegen breakage syndrome 1 
 bra-r.6   103870901   nijmegen breakage syndrome 1 protein 
 bna-r.1   106453222   nijmegen breakage syndrome 1 protein 
 bna-r.1   125575232   nijmegen breakage syndrome 1 protein-like 
 ghi-r.1   121210865   nijmegen breakage syndrome 1 protein 
 ghi-r.1   107935715   nijmegen breakage syndrome 1 protein 
 cit-r.1   102614559   nibrin homolog 
 gma-u.5   100783205   nijmegen breakage syndrome 1 protein 
 vvi-u.5   100853048   nibrin homolog 
 ppo-u.5   7474071   nibrin homolog 
 mtr-u.5   11436414   nijmegen breakage syndrome 1 protein 
 sly-u.5   101261187   nibrin homolog 
 sot-r.1   102581377   nijmegen breakage syndrome 1 protein 
 nta-r.1   107829397   nibrin homolog 
 nta-r.1   107779733   nibrin homolog 
 osa-u.5   4348951   nijmegen breakage syndrome 1 protein-like 
 zma-u.5   100501841   Nijmegen breakage syndrome 1 protein 
 tae-r.2   123046539   nijmegen breakage syndrome 1 protein 
 tae-r.2   123122050   nijmegen breakage syndrome 1 protein 
 tae-r.2   123181133   nijmegen breakage syndrome 1 protein 
 hvu-r.1   123431957   nijmegen breakage syndrome 1 protein 
 sbi-r.1   8067124   nijmegen breakage syndrome 1 protein 
 bdi-r.1   100824411   nijmegen breakage syndrome 1 protein 

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Top 50 coexpressed genes to NBS1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NBS1 (ath-u.5 coexpression data)

CoexMap"821254"


athNBS1 | Entrez gene ID : 821254      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03440 [list] [network] Homologous recombination (60 genes)
GO BP
GO:0071479 [list] [network] cellular response to ionizing radiation  (3 genes)  IEP  
GO:0006312 [list] [network] mitotic recombination  (5 genes)  IMP  
GO:0007129 [list] [network] homologous chromosome pairing at meiosis  (31 genes)  IGI  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (43 genes)  IMP  
GO:0007131 [list] [network] reciprocal meiotic recombination  (44 genes)  IGI IMP  
GO:0006974 [list] [network] DNA damage response  (246 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_186917.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto_nucl 4,  nucl 3,  cyto 3,  extr 3  (predict for NP_186917.2)
Subcellular
localization
TargetP
other 8  (predict for NP_186917.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
NBS1
ath-r.7
for
NBS1
ath-m.9
for
NBS1
ath-e.2
for
NBS1
ath-m.4.bio
for
NBS1
ath-m.4.hor
for
NBS1
ath-m.4.lig
for
NBS1
ath-m.4.str
for
NBS1
ath-m.4.tis
for
NBS1
bra-r.6
for
103870901
bna-r.1
for
106453222
bna-r.1
for
125575232
ghi-r.1
for
121210865
ghi-r.1
for
107935715
cit-r.1
for
102614559
gma-u.5
for
100783205
vvi-u.5
for
100853048
ppo-u.5
for
7474071
mtr-u.5
for
11436414
sly-u.5
for
101261187
sot-r.1
for
102581377
nta-r.1
for
107829397
nta-r.1
for
107779733
osa-u.5
for
4348951
zma-u.5
for
100501841
tae-r.2
for
123046539
tae-r.2
for
123122050
tae-r.2
for
123181133
hvu-r.1
for
123431957
sbi-r.1
for
8067124
bdi-r.1
for
100824411


Ortholog ID: 10782
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol NBS1 LOC103870901 LOC106453222 LOC125575232 LOC121210865 LOC107935715 LOC102614559 LOC100783205 LOC100853048 LOC7474071 LOC11436414 LOC101261187 LOC102581377 LOC107829397 LOC107779733 LOC4348951 LOC100501841 LOC123046539 LOC123122050 LOC123181133 LOC123431957 LOC8067124 LOC100824411
Function* nijmegen breakage syndrome 1 nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein-like nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nibrin homolog nijmegen breakage syndrome 1 protein nibrin homolog nibrin homolog nijmegen breakage syndrome 1 protein nibrin homolog nijmegen breakage syndrome 1 protein nibrin homolog nibrin homolog nijmegen breakage syndrome 1 protein-like Nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein nijmegen breakage syndrome 1 protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03440 Homologous recombination 2
bra04144 Endocytosis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 2
vvi03015 mRNA surveillance pathway 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03440 Homologous recombination 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae00770 Pantothenate and CoA biosynthesis 2
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821254 103870901 106453222 125575232 121210865 107935715 102614559 100783205 100853048 7474071 11436414 101261187 102581377 107829397 107779733 4348951 100501841 123046539 123122050 123181133 123431957 8067124 100824411
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