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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100790941   general transcription factor IIF subunit 2 
 gma-r.7   100790941   general transcription factor IIF subunit 2 
 gma-u.5   100784080   transcription initiation factor IIF subunit beta 
 gma-u.5   100788473   transcription initiation factor IIF subunit beta-like 
 mtr-u.5   25490245   transcription initiation factor IIF subunit beta 
 ppo-u.5   7479707   transcription initiation factor IIF subunit beta 
 ppo-u.5   7493937   transcription initiation factor IIF subunit beta 
 ath-u.5   AT1G75510   Transcription initiation factor IIF, beta subunit 
 vvi-u.5   100267659   uncharacterized LOC100267659 
 vvi-u.5   100263243   uncharacterized LOC100263243 
 sly-u.5   101257024   uncharacterized LOC101257024 
 sly-u.5   101263130   transcription initiation factor IIF subunit beta 
 osa-u.5   9270266   transcription initiation factor IIF subunit beta 
 osa-u.5   4339276   uncharacterized LOC4339276 
 zma-u.5   100216909   Transcription initiation factor IIF beta subunit 
 zma-u.5   100283439   uncharacterized LOC100283439 

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Top 50 coexpressed genes to 100790941 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100790941 (gma-u.5 coexpression data)

CoexMap"100790941"


gmaLOC100790941 | Entrez gene ID : 100790941      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 2 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03022 [list] [network] Basal transcription factors (90 genes)
GO BP
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (62 genes)  IEA  
GO:0006366 [list] [network] transcription by RNA polymerase II  (130 genes)  IEA  
GO CC
GO:0005674 [list] [network] transcription factor TFIIF complex  (5 genes)  IEA  
GO MF
Protein XP_003524637.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_003524637.2)
Subcellular
localization
TargetP
other 7,  chlo 5  (predict for XP_003524637.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100790941

.
gma-r.7
for
100790941

.
gma-u.5
for
100784080

.
gma-u.5
for
100788473

.
mtr-u.5
for
25490245

.
ppo-u.5
for
7479707

.
ppo-u.5
for
7493937

.
ath-u.5
for
AT1G75510

.
vvi-u.5
for
100267659

.
vvi-u.5
for
100263243

.
sly-u.5
for
101257024

.
sly-u.5
for
101263130

.
osa-u.5
for
9270266

.
osa-u.5
for
4339276

.
zma-u.5
for
100216909

.
zma-u.5
for
100283439

.


Ortholog ID: 3351
Species ath gma gma sly sly osa osa zma zma vvi vvi ppo mtr tae hvu ghi ghi bna sbi sot cit cit bdi nta
Symbol AT1G75510 LOC100790941 LOC100784080 LOC101263130 LOC101257024 LOC4339276 LOC9270266 LOC100283439 LOC100216909 LOC100263243 LOC100267659 LOC7493937 LOC25490245 LOC123062045 LOC123447597 LOC107957591 LOC107915898 LOC106397274 LOC8080095 LOC102606124 LOC102608223 LOC102610310 LOC100843964 LOC107785756
Function* Transcription initiation factor IIF, beta subunit general transcription factor IIF subunit 2 transcription initiation factor IIF subunit beta transcription initiation factor IIF subunit beta uncharacterized LOC101257024 uncharacterized LOC4339276 transcription initiation factor IIF subunit beta uncharacterized LOC100283439 Transcription initiation factor IIF beta subunit uncharacterized LOC100263243 uncharacterized LOC100267659 transcription initiation factor IIF subunit beta transcription initiation factor IIF subunit beta general transcription factor IIF subunit 2 general transcription factor IIF subunit 2 transcription initiation factor IIF subunit beta general transcription factor IIF subunit 2 transcription initiation factor IIF subunit beta general transcription factor IIF subunit 2 transcription initiation factor IIF subunit beta transcription initiation factor IIF subunit beta uncharacterized LOC102610310 general transcription factor IIF subunit 2 transcription initiation factor IIF subunit beta
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 3
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 4
gma04142 Lysosome 4
gma04144 Endocytosis 4
gma05100 Bacterial invasion of epithelial cells 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04141 Protein processing in endoplasmic reticulum 2
gma03022 Basal transcription factors 2
gma03010 Ribosome 2
gma00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
sly00941 Flavonoid biosynthesis 2
sly00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 3
osa03022 Basal transcription factors 2
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00020 Citrate cycle (TCA cycle) 3
vvi01200 Carbon metabolism 3
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00620 Pyruvate metabolism 2
vvi00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 9
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 10
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 2
ghi00261 Monobactam biosynthesis 2
ghi00270 Cysteine and methionine metabolism 2
ghi00300 Lysine biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03040 Spliceosome 4
bna00860 Porphyrin metabolism 3
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta00514 Other types of O-glycan biosynthesis 2
nta03022 Basal transcription factors 2
nta03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843887 100790941 100784080 101263130 101257024 4339276 9270266 100283439 100216909 100263243 100267659 7493937 25490245 123062045 123447597 107957591 107915898 106397274 8080095 102606124 102608223 102610310 100843964 107785756
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