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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100791963   agamous-like MADS-box protein TM6 
 gma-r.7   100791963   agamous-like MADS-box protein TM6 
 gma-m.5   100791963   agamous-like MADS-box protein TM6 
 gma-u.5   100784496   floral homeotic protein DEFICIENS-like 
 gma-u.5   100809514   agamous-like MADS-box protein AP3 
 gma-u.5   NMH7   MADS-box protein NMH7 
 mtr-u.5   11433683   agamous-like MADS-box protein AP3 
 mtr-u.5   11426468   agamous-like MADS-box protein TM6 
 ppo-u.5   18101228   agamous-like MADS-box protein TM6 
 ath-u.5   AP3   K-box region and MADS-box transcription factor family protein 
 vvi-u.5   TM6   flowering-related B-class MADS-box protein 
 vvi-u.5   AP3   flowering-related B-class MADS-box protein APETALA3 
 sly-u.5   TDR6   TDR6 transcription factor 
 sly-u.5   DEF   floral homeotic protein DEFICIENS 
 osa-u.5   4342047   MADS-box transcription factor 16-like 
 zma-u.5   541799   silky 1 

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Top 50 coexpressed genes to 100791963 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100791963 (gma-u.5 coexpression data)

CoexMap"100791963"


gmaLOC100791963 | Entrez gene ID : 100791963      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 2 1 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (294 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (449 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (557 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (899 genes)  IEA  
Protein XP_006590704.1 [sequence] [blastp]
XP_006590705.1 [sequence] [blastp]
XP_006590706.1 [sequence] [blastp]
XP_006590707.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for XP_006590704.1)
nucl 8,  cyto 1  (predict for XP_006590705.1)
nucl 9,  cyto 1,  mito 1  (predict for XP_006590706.1)
nucl 9,  cyto 1,  mito 1  (predict for XP_006590707.1)
Subcellular
localization
TargetP
other 8  (predict for XP_006590704.1)
other 8  (predict for XP_006590705.1)
other 8  (predict for XP_006590706.1)
other 8  (predict for XP_006590707.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100791963

.
gma-r.7
for
100791963

.
gma-m.5
for
100791963

.
gma-u.5
for
100784496

.
gma-u.5
for
100809514

.
gma-u.5
for
NMH7

.
mtr-u.5
for
11433683

.
mtr-u.5
for
11426468

.
ppo-u.5
for
18101228

.
ath-u.5
for
AP3

.
vvi-u.5
for
TM6

.
vvi-u.5
for
AP3

.
sly-u.5
for
TDR6

.
sly-u.5
for
DEF

.
osa-u.5
for
4342047

.
zma-u.5
for
541799

.


Ortholog ID: 3591
Species ath gma gma sly sly osa zma bra vvi vvi mtr mtr tae ghi ghi bna bna sot cit cit nta nta
Symbol AP3 LOC100809514 LOC100784496 DEF TDR6 LOC4342047 LOC541799 LOC103841349 TM6 AP3 LOC11426468 LOC11433683 LOC123157564 LOC107936526 LOC107927061 LOC106449291 LOC106431373 LOC102601659 LOC102609278 LOC102627791 LOC142179077 LOC107802634
Function* K-box region and MADS-box transcription factor family protein agamous-like MADS-box protein AP3 floral homeotic protein DEFICIENS-like floral homeotic protein DEFICIENS TDR6 transcription factor MADS-box transcription factor 16-like silky 1 floral homeotic protein APETALA 3 flowering-related B-class MADS-box protein flowering-related B-class MADS-box protein APETALA3 agamous-like MADS-box protein TM6 agamous-like MADS-box protein AP3 MADS-box transcription factor 16 agamous-like MADS-box protein TM6 floral homeotic protein PMADS 1-like floral homeotic protein APETALA 3-like floral homeotic protein APETALA 3-like floral homeotic protein DEFICIENS-like agamous-like MADS-box protein AP3 agamous-like MADS-box protein TM6 floral homeotic protein PMADS 1 floral homeotic protein PMADS 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
gma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 2
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 2
tae00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824601 100809514 100784496 778307 544255 4342047 541799 103841349 100233014 100233029 11426468 11433683 123157564 107936526 107927061 106449291 106431373 102601659 102609278 102627791 142179077 107802634
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