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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100792275   29 kDa ribonucleoprotein, chloroplastic 
 gma-r.7   100792275   29 kDa ribonucleoprotein, chloroplastic 
 gma-u.5   100793319   RNA-binding domain-containing protein 
 mtr-u.5   11430294   RNA-binding protein CP31B, chloroplastic 
 ppo-u.5   18094157   28 kDa ribonucleoprotein, chloroplastic 
 ath-u.5   AT2G35410   RNA-binding (RRM/RBD/RNP motifs) family protein 
 vvi-u.5   100243747   RNA-binding protein CP29B, chloroplastic 
 sly-u.5   101245785   28 kDa ribonucleoprotein, chloroplastic 
 osa-u.5   4336824   28 kDa ribonucleoprotein, chloroplastic 
 zma-u.5   100281348   uncharacterized LOC100281348 

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Top 50 coexpressed genes to 100792275 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100792275 (gma-u.5 coexpression data)

CoexMap"100792275"


gmaLOC100792275 | Entrez gene ID : 100792275      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901259 [list] [network] chloroplast rRNA processing  (32 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (205 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (563 genes)  IEA  
Protein XP_003534278.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1  (predict for XP_003534278.1)
Subcellular
localization
TargetP
chlo 5  (predict for XP_003534278.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100792275

.
gma-r.7
for
100792275

.
gma-u.5
for
100793319

.
mtr-u.5
for
11430294

.
ppo-u.5
for
18094157

.
ath-u.5
for
AT2G35410

.
vvi-u.5
for
100243747

.
sly-u.5
for
101245785

.
osa-u.5
for
4336824

.
zma-u.5
for
100281348

.


Ortholog ID: 10696
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit nta
Symbol AT2G35410 LOC100792275 LOC100793319 LOC101245785 LOC4336824 LOC100281348 LOC103865452 LOC100243747 LOC18094157 LOC11430294 LOC123190359 LOC123054503 LOC123427881 LOC107942197 LOC107922799 LOC106447311 LOC106366974 LOC8071081 LOC102600274 LOC102624663 LOC107782611
Function* RNA-binding (RRM/RBD/RNP motifs) family protein 29 kDa ribonucleoprotein, chloroplastic RNA-binding domain-containing protein 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic uncharacterized LOC100281348 28 kDa ribonucleoprotein, chloroplastic RNA-binding protein CP29B, chloroplastic 28 kDa ribonucleoprotein, chloroplastic RNA-binding protein CP31B, chloroplastic 33 kDa ribonucleoprotein, chloroplastic 33 kDa ribonucleoprotein, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 33 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic RNA-binding protein CP29B, chloroplastic 28 kDa ribonucleoprotein, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 5
ath01240 Biosynthesis of cofactors 2
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 4
zma01230 Biosynthesis of amino acids 4
zma00710 Carbon fixation by Calvin cycle 3
zma03010 Ribosome 3
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00030 Pentose phosphate pathway 2
tae00710 Carbon fixation by Calvin cycle 2
tae01200 Carbon metabolism 2
tae01230 Biosynthesis of amino acids 2
tae00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 7
tae00710 Carbon fixation by Calvin cycle 6
tae00630 Glyoxylate and dicarboxylate metabolism 5
tae00020 Citrate cycle (TCA cycle) 3
tae00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 4
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818107 100792275 100793319 101245785 4336824 100281348 103865452 100243747 18094157 11430294 123190359 123054503 123427881 107942197 107922799 106447311 106366974 8071081 102600274 102624663 107782611
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