ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100793221	reticulon-like protein B3
gma-r.7	100793221	reticulon-like protein B3
gma-u.5	100527903	reticulon domain-containing protein
gma-u.5	100306402	uncharacterized LOC100306402
gma-u.5	100809028	reticulon-like protein B9
mtr-u.5	25502127	reticulon-like protein B2
mtr-u.5	25500807	reticulon-like protein B4
ppo-u.5	7453887	reticulon-like protein B9
ppo-u.5	7457367	reticulon-like protein B5
ath-u.5	AT2G46170	Reticulon family protein
ath-u.5	AT1G68230	Reticulon family protein
ath-u.5	RTNLB3	Reticulan like protein B3
bra-r.6	103858597	reticulon-like protein B2
bra-r.6	103831239	reticulon-like protein B14
bra-r.6	103836883	reticulon-like protein B7
vvi-u.5	100241363	reticulon-like protein B1
vvi-u.5	104879950	reticulon-like protein B2
ghi-r.1	107954518	reticulon-like protein B5
ghi-r.1	107951963	reticulon-like protein B3
ghi-r.1	107947675	reticulon-like protein B3
bna-r.1	125593224	reticulon-like protein B7
bna-r.1	125574992	reticulon-like protein B8
bna-r.1	125577082	reticulon-like protein B1
cit-r.1	102606768	reticulon-like protein B9
cit-r.1	102609187	reticulon-like protein B2
sly-u.5	101260015	reticulon-like protein B2
sly-u.5	101259405	reticulon-like protein B8
sot-r.1	102596812	reticulon-like protein B6
nta-r.1	107782454	reticulon-like protein B4
osa-u.5	4325472	reticulon-like protein B9
osa-u.5	9271780	reticulon-like protein B12
zma-u.5	100282693	uncharacterized LOC100282693
zma-u.5	100284518	seed maturation protein
zma-u.5	100191184	uncharacterized LOC100191184
tae-r.2	123079090	reticulon-like protein B1
tae-r.2	123147857	reticulon-like protein B2
hvu-r.1	123443230	reticulon-like protein B1
hvu-r.1	123444349	reticulon-like protein B1
sbi-r.1	8084154	reticulon-like protein B8
sbi-r.1	8074554	reticulon-like protein B9
bdi-r.1	100844995	reticulon-like protein B2
bdi-r.1	100844372	reticulon-like protein B1
bdi-r.1	100842730	reticulon-like protein B1
cre-r.1	CHLRE_16g689087v5	uncharacterized protein
cre-r.1	CHLRE_06g308950v5	uncharacterized protein

Top 50 coexpressed genes to 100793221 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100793221 (gma-u.5 coexpression data)

CoexMap"100793221"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_040869287.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, E.R. 3, golg_plas 3

(predict for XP_040869287.1)

Subcellular
localization
TargetP

other 9

(predict for XP_040869287.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100793221	gma-r.7 for 100793221	gma-u.5 for 100527903	gma-u.5 for 100306402	gma-u.5 for 100809028	mtr-u.5 for 25502127	mtr-u.5 for 25500807	ppo-u.5 for 7453887	ppo-u.5 for 7457367	ath-u.5 for AT2G46170	ath-u.5 for AT1G68230	ath-u.5 for RTNLB3	bra-r.6 for 103858597	bra-r.6 for 103831239	bra-r.6 for 103836883	vvi-u.5 for 100241363	vvi-u.5 for 104879950	ghi-r.1 for 107954518	ghi-r.1 for 107951963	ghi-r.1 for 107947675	bna-r.1 for 125593224	bna-r.1 for 125574992	bna-r.1 for 125577082	cit-r.1 for 102606768	cit-r.1 for 102609187	sly-u.5 for 101260015	sly-u.5 for 101259405	sot-r.1 for 102596812	nta-r.1 for 107782454	osa-u.5 for 4325472	osa-u.5 for 9271780	zma-u.5 for 100282693	zma-u.5 for 100284518	zma-u.5 for 100191184	tae-r.2 for 123079090	tae-r.2 for 123147857	hvu-r.1 for 123443230	hvu-r.1 for 123444349	sbi-r.1 for 8084154	sbi-r.1 for 8074554	bdi-r.1 for 100844995	bdi-r.1 for 100844372	bdi-r.1 for 100842730	cre-r.1 for CHLRE_16g689087v5	cre-r.1 for CHLRE_06g308950v5

Ortholog

Ortholog ID: 116

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

BTI1

Function^*

reticulon-like protein B5

reticulon-like protein B8-like

reticulon-like protein B5-like

reticulon-like protein B9

reticulon-like protein B8

reticulon-like protein B5

reticulon-like protein B2

reticulon-like protein B1

Reticulon family protein

VIRB2-interacting protein 1

reticulon-like protein B3

reticulon-like protein B8

reticulon-like protein B3

reticulon-like protein B8

reticulon-like protein B5

reticulon-like protein B3

reticulon-like protein B2

reticulon-like protein B3

reticulon-like protein B5

reticulon-like protein B1

reticulon-like protein B9

reticulon-like protein B1

reticulon-like protein B9

reticulon-like protein B8

reticulon-like protein B1

reticulon-like protein B8

reticulon-like protein B5

reticulon-like protein B9

reticulon-like protein B1

reticulon-like protein B8

uncharacterized LOC100282693

Seed maturation protein

seed maturation protein

reticulon-like protein B1

reticulon-like protein B2

reticulon-like protein B1

reticulon-like protein B9

reticulon-like protein B1

reticulon-like protein B4

reticulon-like protein B1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	5
gma00270	Cysteine and methionine metabolism	4
gma01200	Carbon metabolism	4
gma00260	Glycine, serine and threonine metabolism	3
gma00750	Vitamin B6 metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	4
ppo03050	Proteasome	3
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
bra01230	Biosynthesis of amino acids	5
bra00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	4
ghi03460	Fanconi anemia pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
bna01240	Biosynthesis of cofactors	4
bna00330	Arginine and proline metabolism	2
bna00410	beta-Alanine metabolism	2
bna00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00330	Arginine and proline metabolism	2
bna00410	beta-Alanine metabolism	2
bna00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00592	alpha-Linolenic acid metabolism	3
cit03022	Basal transcription factors	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	2
cit04814	Motor proteins	2
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	3
cit00052	Galactose metabolism	2
cit00520	Amino sugar and nucleotide sugar metabolism	2
cit01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	2
sly04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	8
sot04142	Lysosome	8
sot04145	Phagosome	7
sot00561	Glycerolipid metabolism	2
sot00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot04141	Protein processing in endoplasmic reticulum	4
sot04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	6
nta04145	Phagosome	6
nta04517	IgSF CAM signaling	6
nta04814	Motor proteins	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3
osa00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	3
osa00520	Amino sugar and nucleotide sugar metabolism	3
osa01250	Biosynthesis of nucleotide sugars	3
osa00061	Fatty acid biosynthesis	2
osa00780	Biotin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00040	Pentose and glucuronate interconversions	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	6
tae04814	Motor proteins	5
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00071	Fatty acid degradation	3
tae03083	Polycomb repressive complex	2
tae04120	Ubiquitin mediated proteolysis	2
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	5
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	2
sbi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00500	Starch and sucrose metabolism	2
cre00010	Glycolysis / Gluconeogenesis	2
cre00030	Pentose phosphate pathway	2
cre00051	Fructose and mannose metabolism	2
cre00052	Galactose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

100779788

100787981

100793862

120577351

11436594

7457367

7472736

18105638

819224

828463

103838233

103870479

103847698

100267805

107896832

107890693

107914521

106450700

106450701

106366486

102609187

102620513

102625122

101259083

101258243

101262660

102582810

102601510

102606390

107768346

107827488

4325472

4326742

4342374

100282693

100191576

100217189

123060769

123161103

123141132

123443230

123448944

123407639

8074554

110433851

100844372

100837161

100846402

5724461

66053917

The preparation time of this page was 0.2 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	2	2	3	3	2	3	3	2	2	1	1	2	3	2	2	2	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100793221 (gma-u.5 coexpression data)

Top 50 enrichment test to 100793221 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**