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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100799108   proteasome subunit alpha type-2-A-like 
 gma-r.7   100799108   proteasome subunit alpha type-2-A-like 
 gma-m.5   100799108   proteasome subunit alpha type-2-A-like 
 gma-u.5   100807110   proteasome subunit alpha type-2-A 
 gma-u.5   100795748   proteasome subunit alpha type-2-A 
 gma-u.5   100527630   N-terminal nucleophile-hydrolase superfamily protein 
 mtr-u.5   25480527   proteasome subunit alpha type-2-A 
 ppo-u.5   7482208   proteasome subunit alpha type-2-A 
 ppo-u.5   7476723   proteasome subunit alpha type-2-A 
 ath-u.5   PAB1   proteasome subunit PAB1 
 ath-u.5   AT1G79210   N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 
 vvi-u.5   100262851   proteasome subunit alpha type-2-B 
 sly-u.5   101247839   proteasome subunit alpha type-2-B 
 sly-u.5   101245889   proteasome subunit alpha type-2-A 
 osa-u.5   4330075   proteasome subunit alpha type-2 
 osa-u.5   4333000   proteasome subunit alpha type-2-like 
 zma-u.5   103653823   uncharacterized LOC103653823 
 zma-u.5   100192809   uncharacterized LOC100192809 
 zma-u.5   100193683   proteasome subunit alpha type 

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Top 50 coexpressed genes to 100799108 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100799108 (gma-u.5 coexpression data)

CoexMap"100799108"


gmaLOC100799108 | Entrez gene ID : 100799108    
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 1 2 2 1 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03050 [list] [network] Proteasome (106 genes)
GO BP
GO:0010498 [list] [network] proteasomal protein catabolic process  (315 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (481 genes)  IEA  
GO CC
GO:0019773 [list] [network] proteasome core complex, alpha-subunit complex  (22 genes)  IEA  
GO:0005839 [list] [network] proteasome core complex  (39 genes)  IEA  
GO MF
Protein NP_001240931.1 [sequence] [blastp]
XP_006584581.2 [sequence] [blastp]
XP_006584582.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 2,  nucl 1,  plas 1,  extr 1,  cysk_nucl 1  (predict for NP_001240931.1)
cyto 5,  chlo 2,  nucl 1,  plas 1,  extr 1,  cysk_nucl 1  (predict for XP_006584581.2)
cyto 5,  chlo 2,  nucl 1,  plas 1,  extr 1,  cysk_nucl 1  (predict for XP_006584582.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001240931.1)
other 7  (predict for XP_006584581.2)
other 7  (predict for XP_006584582.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100799108

.
gma-r.7
for
100799108

.
gma-m.5
for
100799108

.
gma-u.5
for
100807110

.
gma-u.5
for
100795748

.
gma-u.5
for
100527630

.
mtr-u.5
for
25480527

.
ppo-u.5
for
7482208

.
ppo-u.5
for
7476723

.
ath-u.5
for
PAB1

.
ath-u.5
for
AT1G79210

.
vvi-u.5
for
100262851

.
sly-u.5
for
101247839

.
sly-u.5
for
101245889

.
osa-u.5
for
4330075

.
osa-u.5
for
4333000

.
zma-u.5
for
103653823

.
zma-u.5
for
100192809

.
zma-u.5
for
100193683

.


Ortholog ID: 3515
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi nta nta
Symbol PAB1 AT1G79210 LOC100527630 LOC100795748 LOC101247839 LOC101245889 LOC4330075 LOC4333000 LOC100192809 LOC100193683 LOC103832398 LOC103853177 LOC100262851 LOC7482208 LOC7476723 LOC25480527 LOC123062025 LOC123070729 LOC123425545 LOC123444315 LOC107958303 LOC107916459 LOC106353416 LOC106354769 CHLRE_08g373250v5 LOC8074791 LOC8077121 LOC102600813 LOC102577817 LOC102624022 LOC100823086 LOC107793517 LOC107796873
Function* proteasome subunit PAB1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein N-terminal nucleophile-hydrolase superfamily protein proteasome subunit alpha type-2-A proteasome subunit alpha type-2-B proteasome subunit alpha type-2-A proteasome subunit alpha type-2 proteasome subunit alpha type-2-like uncharacterized LOC100192809 proteasome subunit alpha type proteasome subunit alpha type-2-A proteasome subunit alpha type-2-A proteasome subunit alpha type-2-B proteasome subunit alpha type-2-A proteasome subunit alpha type-2-A proteasome subunit alpha type-2-A proteasome subunit alpha type-2 proteasome subunit alpha type-2 proteasome subunit alpha type-2 proteasome subunit alpha type-2 proteasome subunit alpha type-2-A proteasome subunit alpha type-2-A proteasome subunit alpha type-2-A proteasome subunit alpha type-2-A uncharacterized protein proteasome subunit alpha type-2 proteasome subunit alpha type-2 proteasome subunit alpha type-2-B uncharacterized LOC102577817 proteasome subunit alpha type-2-A proteasome subunit alpha type-2 proteasome subunit alpha type-2-A proteasome subunit alpha type-2-A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 9
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 8
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 9
bra03040 Spliceosome 3
bra03440 Homologous recombination 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 5
ppo03010 Ribosome 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr00100 Steroid biosynthesis 3
mtr00240 Pyrimidine metabolism 2
mtr01232 Nucleotide metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 13
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 3
tae00230 Purine metabolism 2
tae00240 Pyrimidine metabolism 2
tae00760 Nicotinate and nicotinamide metabolism 2
tae01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 3
hvu03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 5
ghi04120 Ubiquitin mediated proteolysis 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 15
bna04141 Protein processing in endoplasmic reticulum 3
bna03018 RNA degradation 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 12
bna04141 Protein processing in endoplasmic reticulum 3
bna03018 RNA degradation 2
bna03040 Spliceosome 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00230 Purine metabolism 4
sbi01200 Carbon metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 6
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 10
cit00510 N-Glycan biosynthesis 2
cit00513 Various types of N-glycan biosynthesis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 10
bdi00020 Citrate cycle (TCA cycle) 4
bdi01200 Carbon metabolism 4
bdi00190 Oxidative phosphorylation 2
bdi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 6
nta03020 RNA polymerase 3
nta03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 6
nta00240 Pyrimidine metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838217 844262 100527630 100795748 101247839 101245889 4330075 4333000 100192809 100193683 103832398 103853177 100262851 7482208 7476723 25480527 123062025 123070729 123425545 123444315 107958303 107916459 106353416 106354769 5726880 8074791 8077121 102600813 102577817 102624022 100823086 107793517 107796873
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