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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100799816   regulator of nonsense transcripts UPF3 
 gma-r.7   100799816   regulator of nonsense transcripts UPF3 
 gma-u.5   100801152   regulator of nonsense transcripts UPF3 
 gma-u.5   100795376   regulator of nonsense transcripts UPF3 
 gma-u.5   100798866   regulator of nonsense transcripts UPF3 
 mtr-u.5   11430328   regulator of nonsense transcripts UPF3 
 mtr-u.5   11419393   regulator of nonsense transcripts UPF3 
 ppo-u.5   7475778   regulator of nonsense transcripts UPF3 
 ppo-u.5   18111147   regulator of nonsense transcripts UPF3 
 ppo-u.5   18098334   regulator of nonsense transcripts UPF3 
 ath-u.5   UPF3   Smg-4/UPF3 family protein 
 vvi-u.5   100852735   regulator of nonsense transcripts UPF3 
 sly-u.5   101264766   regulator of nonsense transcripts UPF3 
 sly-u.5   101263168   regulator of nonsense transcripts UPF3-like 
 osa-u.5   4335928   regulator of nonsense transcripts UPF3 
 zma-u.5   103641667   regulator of nonsense transcripts UPF3-like 
 zma-u.5   103646424   regulator of nonsense transcripts UPF3 

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Top 50 coexpressed genes to 100799816 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100799816 (gma-u.5 coexpression data)

CoexMap"100799816"


gmaLOC100799816 | Entrez gene ID : 100799816    
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 2 3 1 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03013 [list] [network] Nucleocytoplasmic transport (189 genes)
gmx03015 [list] [network] mRNA surveillance pathway (214 genes)
GO BP
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (26 genes)  IEA  
GO:0045727 [list] [network] positive regulation of translation  (40 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (353 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (563 genes)  IEA  
Protein XP_006598794.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  mito 4,  cyto_nucl 4  (predict for XP_006598794.1)
Subcellular
localization
TargetP
other 3,  mito 3  (predict for XP_006598794.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100799816

.
gma-r.7
for
100799816

.
gma-u.5
for
100801152

.
gma-u.5
for
100795376

.
gma-u.5
for
100798866

.
mtr-u.5
for
11430328

.
mtr-u.5
for
11419393

.
ppo-u.5
for
7475778

.
ppo-u.5
for
18111147

.
ppo-u.5
for
18098334

.
ath-u.5
for
UPF3

.
vvi-u.5
for
100852735

.
sly-u.5
for
101264766

.
sly-u.5
for
101263168

.
osa-u.5
for
4335928

.
zma-u.5
for
103641667

.
zma-u.5
for
103646424

.


Ortholog ID: 3869
Species ath gma gma sly sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit cit bdi nta nta
Symbol UPF3 LOC100799816 LOC100801152 LOC101263168 LOC101264766 LOC4335928 LOC103641667 LOC103646424 LOC103833613 LOC103840043 LOC100852735 LOC7475778 LOC18098334 LOC11419393 LOC11430328 LOC123189288 LOC123053380 LOC123426789 LOC107928322 LOC107937348 LOC106425604 LOC106418963 CHLRE_12g488100v5 LOC8080328 LOC102586824 LOC102601432 LOC102616588 LOC102625038 LOC100844832 LOC107788108 LOC107817079
Function* Smg-4/UPF3 family protein regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3-like regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3-like regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3-like regulator of nonsense transcripts UPF3 uncharacterized protein regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3-like regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3-like regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3 regulator of nonsense transcripts UPF3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 4
ath03018 RNA degradation 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 6
gma03013 Nucleocytoplasmic transport 2
gma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03083 Polycomb repressive complex 3
mtr03018 RNA degradation 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03082 ATP-dependent chromatin remodeling 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae03250 Viral life cycle - HIV-1 3
tae03013 Nucleocytoplasmic transport 3
tae03082 ATP-dependent chromatin remodeling 2
tae03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 7
ghi04382 Cornified envelope formation 5
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 7
bna03015 mRNA surveillance pathway 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 7
bna03015 mRNA surveillance pathway 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi03015 mRNA surveillance pathway 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
nta03083 Polycomb repressive complex 2
nta03250 Viral life cycle - HIV-1 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840295 100799816 100801152 101263168 101264766 4335928 103641667 103646424 103833613 103840043 100852735 7475778 18098334 11419393 11430328 123189288 123053380 123426789 107928322 107937348 106425604 106418963 5716657 8080328 102586824 102601432 102616588 102625038 100844832 107788108 107817079
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