ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	NRAMP2A	metal transporter Nramp2a
gma-u.5	NRAMP1A	divalent metal ion transporter NRAMP1a
mtr-u.5	25493521	metal transporter Nramp3
mtr-u.5	11407831	metal transporter Nramp3
ppo-u.5	7472676	metal transporter Nramp2
ppo-u.5	18101157	metal transporter Nramp3
ppo-u.5	18101156	metal transporter Nramp3
ath-u.5	NRAMP2	NRAMP metal ion transporter 2
ath-u.5	NRAMP3	natural resistance-associated macrophage protein 3
ath-u.5	NRAMP4	natural resistance associated macrophage protein 4
vvi-u.5	100262579	metal transporter Nramp2
vvi-u.5	100268041	metal transporter Nramp3.2
sly-u.5	Nramp2	metal transporter Nramp2
sly-u.5	NRAMP3	metal transporter
osa-u.5	4333420	metal transporter Nramp6-like
osa-u.5	4332012	metal transporter Nramp2-like
osa-u.5	4352640	metal transporter Nramp6-like
zma-u.5	100383075	uncharacterized LOC100383075
zma-u.5	100283910	uncharacterized LOC100283910

Annotation

functional annotation

KEGG

gmx04142 [list] [network] Lysosome (152 genes)

GO BP

GO:0030001 [list] [network] metal ion transport

(312 genes)

IEA

GO CC

GO:0016020 [list] [network] membrane

(5894 genes)

IEA

GO MF

GO:0015086 [list] [network] cadmium ion transmembrane transporter activity	(16 genes)	IEA
GO:0005384 [list] [network] manganese ion transmembrane transporter activity	(49 genes)	IEA

Protein

XP_003529902.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, cyto 2, vacu 1, E.R. 1, E.R._vacu 1

(predict for XP_003529902.1)

Subcellular
localization
TargetP

other 8

(predict for XP_003529902.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for NRAMP2A	gma-u.5 for NRAMP1A	mtr-u.5 for 25493521	mtr-u.5 for 11407831	ppo-u.5 for 7472676	ppo-u.5 for 18101157	ppo-u.5 for 18101156	ath-u.5 for NRAMP2	ath-u.5 for NRAMP3	ath-u.5 for NRAMP4	vvi-u.5 for 100262579	vvi-u.5 for 100268041	sly-u.5 for Nramp2	sly-u.5 for NRAMP3	osa-u.5 for 4333420	osa-u.5 for 4332012	osa-u.5 for 4352640	zma-u.5 for 100383075	zma-u.5 for 100283910

Ortholog

Ortholog ID: 1485

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

NRAMP3A

NRAMP2A

NRAMP4

NRAMP2

NRAMP3

Nramp2

Function^*

metal transporter Nramp3a

metal transporter Nramp2a

metal transporter Nramp2

metal transporter Nramp3

metal transporter Nramp2

metal transporter Nramp3

natural resistance associated macrophage protein 4

NRAMP metal ion transporter 2

metal transporter Nramp4

metal transporter Nramp2

metal transporter Nramp3.2

metal transporter Nramp2

metal transporter Nramp3

metal transporter Nramp2

metal transporter Nramp3-like

metal transporter Nramp2

metal transporter Nramp3

metal transporter Nramp2-like

metal transporter

metal transporter Nramp2

metal transporter Nramp2-like

metal transporter Nramp3.2

metal transporter Nramp6-like

uncharacterized LOC100283910

uncharacterized LOC100383075

metal transporter Nramp6

metal transporter Nramp2

metal transporter Nramp6

metal transporter Nramp2

metal transporter Nramp6

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00230	Purine metabolism	2
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr02010	ABC transporters	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00740	Riboflavin metabolism	4
mtr01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	3
ppo04144	Endocytosis	3
ppo04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00520	Amino sugar and nucleotide sugar metabolism	4
ath04142	Lysosome	2
ath01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	6
bra04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2
vvi00730	Thiamine metabolism	2
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00270	Cysteine and methionine metabolism	3
vvi00710	Carbon fixation by Calvin cycle	3
vvi01200	Carbon metabolism	3
vvi00513	Various types of N-glycan biosynthesis	3
vvi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi04075	Plant hormone signal transduction	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00051	Fructose and mannose metabolism	2
cit00500	Starch and sucrose metabolism	2
cit00520	Amino sugar and nucleotide sugar metabolism	2
cit01250	Biosynthesis of nucleotide sugars	2
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	3
sot04144	Endocytosis	3
sot00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	2
nta00053	Ascorbate and aldarate metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01240	Biosynthesis of cofactors	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	4
nta04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00230	Purine metabolism	2
zma00240	Pyrimidine metabolism	2
zma01232	Nucleotide metabolism	2
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	3
hvu04142	Lysosome	2
hvu04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03060	Protein export	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04081	Hormone signaling	2
cre00860	Porphyrin metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

100791117

100812381

25489927

25493521

7472676

18101156

836868

841127

103829512

103849582

100268041

100262579

107931677

107905619

125584396

106371864

102621721

102613637

544257

543927

102602058

102578842

107798557

107798562

4333420

4352640

100283910

100383075

123119624

123449372

8069691

100845842

100828548

66053512

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to NRAMP2A (gma-u.5 coexpression data)

Top 50 enrichment test to NRAMP2A (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	2	2	3	3	2	2	3	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to NRAMP2A (gma-u.5 coexpression data)

Top 50 enrichment test to NRAMP2A (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**