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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100804821   pentatricopeptide repeat-containing protein At4g04370 
 gma-r.7   100804821   pentatricopeptide repeat-containing protein At4g04370 
 mtr-u.5   25486215   pentatricopeptide repeat-containing protein At4g04370 
 ath-u.5   AT4G04370   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103839842   pentatricopeptide repeat-containing protein At4g04370 
 vvi-u.5   109121416   pentatricopeptide repeat-containing protein At4g04370 
 ghi-r.1   107962014   pentatricopeptide repeat-containing protein At4g04370 
 ghi-r.1   107910044   pentatricopeptide repeat-containing protein At4g04370 
 sly-u.5   101247088   pentatricopeptide repeat-containing protein At4g04370 
 sot-r.1   102606306   pentatricopeptide repeat-containing protein At4g04370 
 nta-r.1   107761801   pentatricopeptide repeat-containing protein At4g04370-like 
 nta-r.1   107820193   pentatricopeptide repeat-containing protein At4g04370-like 

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Top 50 coexpressed genes to 100804821 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100804821 (gma-u.5 coexpression data)

CoexMap"100804821"


gmaLOC100804821 | Entrez gene ID : 100804821      
Species gma mtr ath bra vvi ghi sly sot nta hvu bdi osa tae bna ppo zma cre sbi cit
Paralog 2 1 1 1 1 2 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (407 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (10455 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (2019 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_003534717.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 1,  cyto_mito 1  (predict for XP_003534717.1)
Subcellular
localization
TargetP
chlo 3,  mito 3  (predict for XP_003534717.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100804821
gma-r.7
for
100804821
mtr-u.5
for
25486215
ath-u.5
for
AT4G04370
bra-r.6
for
103839842
vvi-u.5
for
109121416
ghi-r.1
for
107962014
ghi-r.1
for
107910044
sly-u.5
for
101247088
sot-r.1
for
102606306
nta-r.1
for
107761801
nta-r.1
for
107820193


Ortholog ID: 13440
Species gma mtr ath bra vvi ghi ghi sly sot nta nta
Symbol LOC100804821 LOC25486215 AT4G04370 LOC103839842 LOC109121416 LOC107962014 LOC107910044 LOC101247088 LOC102606306 LOC107761801 LOC107820193
Function* pentatricopeptide repeat-containing protein At4g04370 pentatricopeptide repeat-containing protein At4g04370 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g04370 pentatricopeptide repeat-containing protein At4g04370 pentatricopeptide repeat-containing protein At4g04370 pentatricopeptide repeat-containing protein At4g04370 pentatricopeptide repeat-containing protein At4g04370 pentatricopeptide repeat-containing protein At4g04370 pentatricopeptide repeat-containing protein At4g04370-like pentatricopeptide repeat-containing protein At4g04370-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 2
mtr00860 Porphyrin metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta04122 Sulfur relay system 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100804821 25486215 825757 103839842 109121416 107962014 107910044 101247088 102606306 107761801 107820193
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