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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100808028   E3 ubiquitin protein ligase RIE1 
 gma-r.7   100808028   E3 ubiquitin protein ligase RIE1 
 gma-m.5   100808028   E3 ubiquitin protein ligase RIE1 
 gma-u.5   100805848   E3 ubiquitin protein ligase RIE1 
 gma-u.5   100797651   E3 ubiquitin protein ligase RIE1 
 gma-u.5   100816519   E3 ubiquitin protein ligase RIE1 
 mtr-u.5   25482547   E3 ubiquitin protein ligase RIE1 
 mtr-u.5   11417020   E3 ubiquitin protein ligase RIE1 
 ppo-u.5   7457804   E3 ubiquitin protein ligase RIE1 
 ath-u.5   RIE1   RING-finger protein for embryogenesi 
 ath-u.5   AT1G68070   Zinc finger, C3HC4 type (RING finger) family protein 
 osa-u.5   4330653   E3 ubiquitin protein ligase RIE1 
 zma-u.5   100283384   uncharacterized LOC100283384 

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Top 50 coexpressed genes to 100808028 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100808028 (gma-u.5 coexpression data)

CoexMap"100808028"


gmaLOC100808028 | Entrez gene ID : 100808028      
Species gma mtr ppo ath osa zma hvu sot vvi tae nta bra cit ghi bna bdi sly sbi cre
Paralog 6 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (481 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (610 genes)  IEA  
GO CC
GO:0000325 [list] [network] plant-type vacuole  (124 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (292 genes)  IEA  
Protein XP_003518612.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  golg 2,  vacu 1,  extr 1,  E.R. 1  (predict for XP_003518612.1)
Subcellular
localization
TargetP
chlo 7,  other 3  (predict for XP_003518612.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100808028

.
gma-r.7
for
100808028

.
gma-m.5
for
100808028

.
gma-u.5
for
100805848

.
gma-u.5
for
100797651

.
gma-u.5
for
100816519

.
mtr-u.5
for
25482547

.
mtr-u.5
for
11417020

.
ppo-u.5
for
7457804

.
ath-u.5
for
RIE1

.
ath-u.5
for
AT1G68070

.
osa-u.5
for
4330653

.
zma-u.5
for
100283384

.


Ortholog ID: 7136
Species ath ath gma gma osa zma bra bra ppo mtr mtr tae tae hvu ghi ghi bna bna sbi bdi
Symbol RIE1 AT1G68070 LOC100808028 LOC100816519 LOC4330653 LOC100283384 LOC103827550 LOC103852443 LOC7457804 LOC25482547 LOC11417020 LOC123128322 LOC123138169 LOC123403196 LOC107943467 LOC107903626 LOC106392350 LOC106389032 LOC8075747 LOC100845906
Function* RING-finger protein for embryogenesi Zinc finger, C3HC4 type (RING finger) family protein E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1 uncharacterized LOC100283384 E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1-like E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1 E3 ubiquitin protein ligase RIE1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 3
ath00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 3
ppo04120 Ubiquitin mediated proteolysis 3
ppo00190 Oxidative phosphorylation 2
ppo04145 Phagosome 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 3
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 5
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
ghi00062 Fatty acid elongation 2
ghi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
sbi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 2
bdi03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814703 843135 100808028 100816519 4330653 100283384 103827550 103852443 7457804 25482547 11417020 123128322 123138169 123403196 107943467 107903626 106392350 106389032 8075747 100845906
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