ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100808123	E3 ubiquitin-protein ligase MARCH1-like
gma-r.7	100808123	E3 ubiquitin-protein ligase MARCH1-like
gma-m.5	100808123	E3 ubiquitin-protein ligase MARCH1-like
gma-u.5	100789593	E3 ubiquitin-protein ligase MARCH1-like
gma-u.5	100782178	C4HC3-type ring finger domain-containing protein
gma-u.5	100820355	uncharacterized LOC100820355
mtr-u.5	11418111	uncharacterized LOC11418111
mtr-u.5	11442838	uncharacterized LOC11442838
mtr-u.5	25488027	E3 ubiquitin-protein ligase MARCHF2
ppo-u.5	7490849	uncharacterized LOC7490849
ppo-u.5	7484686	uncharacterized LOC7484686
ath-u.5	AT2G22120	RING/FYVE/PHD zinc finger superfamily protein
ath-u.5	AT1G11020	RING/FYVE/PHD zinc finger superfamily protein
ath-u.5	AT1G50440	RING/FYVE/PHD zinc finger superfamily protein
vvi-u.5	100266317	uncharacterized LOC100266317
vvi-u.5	100254401	uncharacterized LOC100254401
vvi-u.5	100251272	uncharacterized LOC100251272
sly-u.5	101263685	uncharacterized LOC101263685
sly-u.5	101258247	uncharacterized LOC101258247
sly-u.5	101246707	uncharacterized LOC101246707
osa-u.5	4345452	uncharacterized LOC4345452
osa-u.5	4327736	uncharacterized LOC4327736
osa-u.5	4328203	uncharacterized LOC4328203
zma-u.5	100285184	zinc finger, C3HC4 type family protein
zma-u.5	100282791	uncharacterized LOC100282791
zma-u.5	100282293	uncharacterized LOC100282293

Top 50 coexpressed genes to 100808123 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100808123 (gma-u.5 coexpression data)

CoexMap"100808123"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0008270 [list] [network] zinc ion binding

(1182 genes)

IEA

Protein

NP_001242639.1 [sequence] [blastp]
XP_006593458.1 [sequence] [blastp]
XP_006593459.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, E.R. 3, cyto 1, E.R._vacu 1	(predict for NP_001242639.1)
E.R. 4, plas 3, cyto 1, mito_plas 1	(predict for XP_006593458.1)
plas 4, E.R. 3, cyto_plas 3	(predict for XP_006593459.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001242639.1)
other 8	(predict for XP_006593458.1)
other 8	(predict for XP_006593459.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100808123	gma-r.7 for 100808123	gma-m.5 for 100808123	gma-u.5 for 100789593	gma-u.5 for 100782178	gma-u.5 for 100820355	mtr-u.5 for 11418111	mtr-u.5 for 11442838	mtr-u.5 for 25488027	ppo-u.5 for 7490849	ppo-u.5 for 7484686	ath-u.5 for AT2G22120	ath-u.5 for AT1G11020	ath-u.5 for AT1G50440	vvi-u.5 for 100266317	vvi-u.5 for 100254401	vvi-u.5 for 100251272	sly-u.5 for 101263685	sly-u.5 for 101258247	sly-u.5 for 101246707	osa-u.5 for 4345452	osa-u.5 for 4327736	osa-u.5 for 4328203	zma-u.5 for 100285184	zma-u.5 for 100282791	zma-u.5 for 100282293

Ortholog

Ortholog ID: 947

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

C4HC3-type ring finger domain-containing protein

E3 ubiquitin-protein ligase MARCH1-like

uncharacterized LOC11442838

E3 ubiquitin-protein ligase MARCHF2

uncharacterized LOC7484686

uncharacterized LOC7490849

RING/FYVE/PHD zinc finger superfamily protein

uncharacterized LOC103868064

uncharacterized LOC103842479

uncharacterized LOC100266317

uncharacterized LOC100251272

uncharacterized LOC107911492

E3 ubiquitin-protein ligase MARCHF8

E3 ubiquitin-protein ligase MARCHF2

uncharacterized BNAC08G35350D

hypothetical protein

uncharacterized LOC102620013

uncharacterized LOC101258247

uncharacterized LOC101263685

E3 ubiquitin-protein ligase MARCH8

uncharacterized LOC102603834

uncharacterized LOC107789319

uncharacterized LOC107805455

uncharacterized LOC4328203

uncharacterized LOC4327736

zinc finger, C3HC4 type family protein

uncharacterized LOC103651597

uncharacterized LOC123154189

uncharacterized LOC123163216

uncharacterized LOC123408768

uncharacterized LOC123448506

uncharacterized LOC8054370

uncharacterized LOC100840561

E3 ubiquitin-protein ligase MARCH9

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	4
mtr04130	SNARE interactions in vesicular transport	2
mtr03083	Polycomb repressive complex	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04382	Cornified envelope formation	3
ppo04120	Ubiquitin mediated proteolysis	2
ppo00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00510	N-Glycan biosynthesis	3
ath00513	Various types of N-glycan biosynthesis	3
ath04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3
bra04141	Protein processing in endoplasmic reticulum	3
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	3
vvi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2
ghi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	3
cit04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00071	Fatty acid degradation	2
cit01212	Fatty acid metabolism	2
cit04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	2
zma03083	Polycomb repressive complex	2
zma04120	Ubiquitin mediated proteolysis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04626	Plant-pathogen interaction	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	4
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	4
bdi00020	Citrate cycle (TCA cycle)	2
bdi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00230	Purine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	6
cre03250	Viral life cycle - HIV-1	2
cre03272	Virion - Hepatitis viruses	2

Expression

Expression pattern

Entrez Gene ID^*

100818950

100789593

11442838

25488027

7484686

7490849

837644

816746

103868064

103842479

100266317

100251272

107911492

107902050

106368829

106416193

102611287

102620013

101258247

101263685

102603806

102603834

107789319

107805455

4328203

4327736

100285184

103651597

123154189

123163216

123408768

123448506

8054370

100840561

100823188

5722634

5722635

The preparation time of this page was 0.1 [sec].


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	6	3	2	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100808123 (gma-u.5 coexpression data)

Top 50 enrichment test to 100808123 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**