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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100809923   putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 
 gma-r.7   100809923   putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 
 mtr-u.5   11424755   putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 
 ppo-u.5   7455223   putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 
 ath-u.5   AT5G01230   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 vvi-u.5   100252784   putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 
 sly-u.5   101251806   tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 
 osa-u.5   4342000   putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 
 zma-u.5   100285845   23S RNA methyltransferase 1 

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Top 50 coexpressed genes to 100809923 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100809923 (gma-u.5 coexpression data)

CoexMap"100809923"


gmaLOC100809923 | Entrez gene ID : 100809923      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030488 [list] [network] tRNA methylation  (45 genes)  IEA  
GO:0002181 [list] [network] cytoplasmic translation  (114 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0008175 [list] [network] tRNA methyltransferase activity  (27 genes)  IEA  
Protein XP_006597429.1 [sequence] [blastp]
XP_006597430.1 [sequence] [blastp]
XP_006597431.1 [sequence] [blastp]
XP_006597432.1 [sequence] [blastp]
XP_014623628.1 [sequence] [blastp]
XP_014623629.1 [sequence] [blastp]
XP_040865854.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  plas 1,  cysk_nucl 1  (predict for XP_006597429.1)
chlo 4,  nucl 3,  plas 1,  cysk_nucl 1  (predict for XP_006597430.1)
chlo 4,  nucl 3,  plas 1,  cysk_nucl 1  (predict for XP_006597431.1)
chlo 4,  nucl 3,  plas 1,  cysk_nucl 1  (predict for XP_006597432.1)
chlo 4,  nucl 3,  plas 1,  cysk_nucl 1  (predict for XP_014623628.1)
chlo 2,  chlo_mito 2,  cyto 2,  pero 2,  cyto_pero 2  (predict for XP_014623629.1)
chlo 4,  nucl 3,  plas 1,  cysk_nucl 1  (predict for XP_040865854.1)
Subcellular
localization
TargetP
other 8,  mito 3  (predict for XP_006597429.1)
other 8,  mito 3  (predict for XP_006597430.1)
other 8,  mito 3  (predict for XP_006597431.1)
other 8,  mito 3  (predict for XP_006597432.1)
other 8,  mito 3  (predict for XP_014623628.1)
other 8,  mito 3  (predict for XP_014623629.1)
other 8,  mito 3  (predict for XP_040865854.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100809923

.
gma-r.7
for
100809923

.
mtr-u.5
for
11424755

.
ppo-u.5
for
7455223

.
ath-u.5
for
AT5G01230

.
vvi-u.5
for
100252784

.
sly-u.5
for
101251806

.
osa-u.5
for
4342000

.
zma-u.5
for
100285845

.


Ortholog ID: 9635
Species ath gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G01230 LOC100809923 LOC101251806 LOC4342000 LOC100285845 LOC103871000 LOC103847498 LOC100252784 LOC7455223 LOC11424755 LOC123148587 LOC123159603 LOC123410232 LOC107890976 LOC107889762 LOC106435879 LOC106447854 CHLRE_03g145907v5 LOC8084654 LOC102604025 LOC102615820 LOC100824779 LOC107784458 LOC107774567
Function* S-adenosyl-L-methionine-dependent methyltransferases superfamily protein putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 23S RNA methyltransferase 1 putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase uncharacterized protein putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma03040 Spliceosome 4
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 3
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae00450 Selenocompound metabolism 2
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00450 Selenocompound metabolism 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
ghi04144 Endocytosis 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 4
bna00240 Pyrimidine metabolism 2
bna01240 Biosynthesis of cofactors 2
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna03018 RNA degradation 2
bna03040 Spliceosome 2
bna04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03040 Spliceosome 4
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot03040 Spliceosome 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00470 D-Amino acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830268 100809923 101251806 4342000 100285845 103871000 103847498 100252784 7455223 11424755 123148587 123159603 123410232 107890976 107889762 106435879 106447854 5721239 8084654 102604025 102615820 100824779 107784458 107774567
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