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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100812582   DNA-binding protein BIN4 
 gma-r.7   100812582   DNA-binding protein BIN4 
 gma-u.5   106798288   uncharacterized LOC106798288 
 gma-u.5   100795660   DNA-binding protein BIN4 
 mtr-u.5   11443488   DNA-binding protein BIN4 
 ppo-u.5   7486704   DNA-binding protein BIN4 
 ath-u.5   BIN4   double-stranded DNA binding protein 
 bra-r.6   103874327   DNA-binding protein BIN4 
 vvi-u.5   100252112   DNA-binding protein BIN4 
 ghi-r.1   107912226   DNA-binding protein BIN4 
 ghi-r.1   107922471   DNA-binding protein BIN4 
 bna-r.1   106348485   DNA-binding protein BIN4 
 bna-r.1   106366003   DNA-binding protein BIN4-like 
 cit-r.1   102616246   DNA-binding protein BIN4 
 sly-u.5   101256852   DNA-binding protein BIN4 
 sot-r.1   102604513   DNA-binding protein BIN4 
 nta-r.1   107779586   uncharacterized LOC107779586 
 nta-r.1   107761646   uncharacterized LOC107761646 
 osa-u.5   4328289   DNA-binding protein BIN4 
 osa-u.5   4328294   DNA-binding protein BIN4 
 zma-u.5   100273715   uncharacterized LOC100273715 
 tae-r.2   123143785   DNA-binding protein BIN4 
 tae-r.2   123136281   DNA-binding protein BIN4 
 tae-r.2   123132237   DNA-binding protein BIN4 
 hvu-r.1   123401307   DNA-binding protein BIN4 
 sbi-r.1   110435018   DNA-binding protein BIN4 
 bdi-r.1   100821932   DNA-binding protein BIN4 
 cre-r.1   CHLRE_02g105050v5   uncharacterized protein 

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Top 50 coexpressed genes to 100812582 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100812582 (gma-u.5 coexpression data)

CoexMap"100812582"


gmaLOC100812582 | Entrez gene ID : 100812582      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 1 1 1 1 2 2 1 1 1 2 2 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042023 [list] [network] DNA endoreduplication  (4 genes)  IEA  
GO:0051276 [list] [network] chromosome organization  (302 genes)  IEA  
GO CC
GO:0009330 [list] [network] DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex  (3 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0003690 [list] [network] double-stranded DNA binding  (950 genes)  IEA  
Protein XP_003526779.2 [sequence] [blastp]
XP_006581694.1 [sequence] [blastp]
XP_006581695.1 [sequence] [blastp]
XP_040872401.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_003526779.2)
nucl 9  (predict for XP_006581694.1)
nucl 9  (predict for XP_006581695.1)
nucl 9  (predict for XP_040872401.1)
Subcellular
localization
TargetP
chlo 5  (predict for XP_003526779.2)
chlo 5  (predict for XP_006581694.1)
chlo 5  (predict for XP_006581695.1)
chlo 5  (predict for XP_040872401.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100812582
gma-r.7
for
100812582
gma-u.5
for
106798288
gma-u.5
for
100795660
mtr-u.5
for
11443488
ppo-u.5
for
7486704
ath-u.5
for
BIN4
bra-r.6
for
103874327
vvi-u.5
for
100252112
ghi-r.1
for
107912226
ghi-r.1
for
107922471
bna-r.1
for
106348485
bna-r.1
for
106366003
cit-r.1
for
102616246
sly-u.5
for
101256852
sot-r.1
for
102604513
nta-r.1
for
107779586
nta-r.1
for
107761646
osa-u.5
for
4328289
osa-u.5
for
4328294
zma-u.5
for
100273715
tae-r.2
for
123143785
tae-r.2
for
123136281
tae-r.2
for
123132237
hvu-r.1
for
123401307
sbi-r.1
for
110435018
bdi-r.1
for
100821932
cre-r.1
for
CHLRE_02g105050v5


Ortholog ID: 7351
Species gma gma gma mtr ppo ath bra vvi ghi ghi bna bna cit sly sot nta nta osa osa zma tae tae tae hvu sbi bdi cre
Symbol LOC100812582 LOC106798288 LOC100795660 LOC11443488 LOC7486704 BIN4 LOC103874327 LOC100252112 LOC107912226 LOC107922471 LOC106366003 LOC106348427 LOC102616246 LOC101256852 LOC102604513 LOC107779586 LOC107761646 LOC4328289 LOC4328294 LOC100273715 LOC123143785 LOC123136281 LOC123132237 LOC123401307 LOC110435018 LOC100821932 CHLRE_02g105050v5
Function* DNA-binding protein BIN4 uncharacterized LOC106798288 DNA-binding protein BIN4 DNA-binding protein BIN4 DNA-binding protein BIN4 double-stranded DNA binding protein DNA-binding protein BIN4 DNA-binding protein BIN4 DNA-binding protein BIN4 DNA-binding protein BIN4 DNA-binding protein BIN4-like DNA-binding protein BIN4-like DNA-binding protein BIN4 DNA-binding protein BIN4 DNA-binding protein BIN4 uncharacterized LOC107779586 uncharacterized LOC107761646 DNA-binding protein BIN4 DNA-binding protein BIN4 uncharacterized LOC100273715 DNA-binding protein BIN4 DNA-binding protein BIN4 DNA-binding protein BIN4 DNA-binding protein BIN4 DNA-binding protein BIN4 DNA-binding protein BIN4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 2
gma00410 beta-Alanine metabolism 2
gma00640 Propanoate metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03410 Base excision repair 6
ath03430 Mismatch repair 4
ath03420 Nucleotide excision repair 4
ath03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03420 Nucleotide excision repair 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100812582 106798288 100795660 11443488 7486704 832534 103874327 100252112 107912226 107922471 106366003 106348427 102616246 101256852 102604513 107779586 107761646 4328289 4328294 100273715 123143785 123136281 123132237 123401307 110435018 100821932 5725534
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