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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100817953   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 gma-r.7   100817953   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 gma-m.5   100817953   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 mtr-u.5   120575931   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 ppo-u.5   7454479   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 ath-u.5   HCF208   chaperone (DUF2930) 
 bra-r.6   103857145   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 vvi-u.5   100252183   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 ghi-r.1   107892052   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 ghi-r.1   107888828   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 bna-r.1   106411954   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic-like 
 bna-r.1   106387953   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 cit-r.1   102620511   hypothetical protein 
 sly-u.5   101265513   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 sot-r.1   102585395   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 nta-r.1   107797345   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 osa-u.5   4349151   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 zma-u.5   100194324   photosynthetic electron transport 2 
 tae-r.2   123123978   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 tae-r.2   123049610   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 tae-r.2   123181380   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 hvu-r.1   123435110   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 sbi-r.1   8063183   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 bdi-r.1   100838404   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic 
 cre-r.1   CHLRE_12g537850v5   uncharacterized protein 

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Top 50 coexpressed genes to 100817953 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100817953 (gma-u.5 coexpression data)

CoexMap"100817953"


gmaLOC100817953 | Entrez gene ID : 100817953      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 1 1 1 2 2 1 1 1 1 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010190 [list] [network] cytochrome b6f complex assembly  (6 genes)  IEA  
GO CC
GO MF
Protein XP_003548220.1 [sequence] [blastp]
XP_014624286.1 [sequence] [blastp]
XP_040866547.1 [sequence] [blastp]
XP_040866548.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1,  extr 1  (predict for XP_003548220.1)
chlo 9  (predict for XP_014624286.1)
chlo 9  (predict for XP_040866547.1)
chlo 9  (predict for XP_040866548.1)
Subcellular
localization
TargetP
chlo 6  (predict for XP_003548220.1)
chlo 6  (predict for XP_014624286.1)
chlo 6  (predict for XP_040866547.1)
chlo 6  (predict for XP_040866548.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100817953
gma-r.7
for
100817953
gma-m.5
for
100817953
mtr-u.5
for
120575931
ppo-u.5
for
7454479
ath-u.5
for
HCF208
bra-r.6
for
103857145
vvi-u.5
for
100252183
ghi-r.1
for
107892052
ghi-r.1
for
107888828
bna-r.1
for
106411954
bna-r.1
for
106387953
cit-r.1
for
102620511
sly-u.5
for
101265513
sot-r.1
for
102585395
nta-r.1
for
107797345
osa-u.5
for
4349151
zma-u.5
for
100194324
tae-r.2
for
123123978
tae-r.2
for
123049610
tae-r.2
for
123181380
hvu-r.1
for
123435110
sbi-r.1
for
8063183
bdi-r.1
for
100838404
cre-r.1
for
CHLRE_12g537850v5


Ortholog ID: 10384
Species gma mtr ppo ath bra vvi ghi ghi bna bna cit sly sot nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC100817953 LOC120575931 LOC7454479 HCF208 LOC103857145 LOC100252183 LOC107892052 LOC107888828 LOC106411954 LOC106387953 LOC102620511 LOC101265513 LOC102585395 LOC107797345 LOC4349151 LOC100194324 LOC123123978 LOC123049610 LOC123181380 LOC123435110 LOC8063183 LOC100838404 CHLRE_12g537850v5
Function* protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic chaperone (DUF2930) protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic-like protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic hypothetical protein protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic photosynthetic electron transport 2 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
ppo03010 Ribosome 2
ppo00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 7
bna00710 Carbon fixation by Calvin cycle 5
bna01200 Carbon metabolism 5
bna01230 Biosynthesis of amino acids 5
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 3
bna00860 Porphyrin metabolism 3
bna01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 2
nta00195 Photosynthesis 2
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03060 Protein export 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00906 Carotenoid biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100817953 120575931 7454479 835287 103857145 100252183 107892052 107888828 106411954 106387953 102620511 101265513 102585395 107797345 4349151 100194324 123123978 123049610 123181380 123435110 8063183 100838404 5718457
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