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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   NF-YC04   nuclear factor Y transcription factor family protein 
 gma-r.7   NF-YC04   nuclear factor Y transcription factor family protein 
 gma-m.5   NF-YC04   nuclear factor Y transcription factor family protein 
 gma-u.5   NF-YC07   nuclear factor Y transcription factor family protein 
 gma-u.5   NF-YC15   nuclear factor Y transcription factor 
 gma-u.5   NF-YC14   nuclear factor Y transcription factor 
 mtr-u.5   11429705   nuclear transcription factor Y subunit C-1 
 mtr-u.5   120578221   nuclear transcription factor Y subunit C-2 
 mtr-u.5   11410747   nuclear transcription factor Y subunit C-3 
 ppo-u.5   7454560   nuclear transcription factor Y subunit C-4 
 ppo-u.5   7454724   nuclear transcription factor Y subunit C-1 
 ath-u.5   NF-YC1   nuclear factor Y, subunit C1 
 ath-u.5   NF-YC4   nuclear factor Y, subunit C4 
 vvi-u.5   100259532   nuclear transcription factor Y subunit C-1 
 vvi-u.5   100266507   nuclear transcription factor Y subunit C-3 
 vvi-u.5   100258035   nuclear transcription factor Y subunit C-9 
 sly-u.5   101247122   nuclear transcription factor Y subunit C-1 
 sly-u.5   CIP2b   CONSTANS interacting protein 2b 
 sly-u.5   CIP2a   CONSTANS interacting protein 2a 
 osa-u.5   4347391   nuclear transcription factor Y subunit C-6-like 
 osa-u.5   9266204   nuclear transcription factor Y subunit C-2-like 
 osa-u.5   4328444   nuclear transcription factor Y subunit C-4-like 
 zma-u.5   100277570   Nuclear transcription factor Y subunit C-9 
 zma-u.5   100273685   nuclear transcription factor Y subunit C-2 
 zma-u.5   100281601   nuclear transcription factor Y subunit C-1 

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Top 50 coexpressed genes to NF-YC04 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NF-YC04 (gma-u.5 coexpression data)

CoexMap"100818447"


gmaNF-YC04 | Entrez gene ID : 100818447      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 2 2 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (3122 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0046982 [list] [network] protein heterodimerization activity  (167 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (772 genes)  IEA  
Protein NP_001349560.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  mito 2,  chlo 1,  cyto 1  (predict for NP_001349560.1)
Subcellular
localization
TargetP
other 5,  mito 4  (predict for NP_001349560.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
NF-YC04

.
gma-r.7
for
NF-YC04

.
gma-m.5
for
NF-YC04

.
gma-u.5
for
NF-YC07

.
gma-u.5
for
NF-YC15

.
gma-u.5
for
NF-YC14

.
mtr-u.5
for
11429705

.
mtr-u.5
for
120578221

.
mtr-u.5
for
11410747

.
ppo-u.5
for
7454560

.
ppo-u.5
for
7454724

.
ath-u.5
for
NF-YC1

.
ath-u.5
for
NF-YC4

.
vvi-u.5
for
100259532

.
vvi-u.5
for
100266507

.
vvi-u.5
for
100258035

.
sly-u.5
for
101247122

.
sly-u.5
for
CIP2b

.
sly-u.5
for
CIP2a

.
osa-u.5
for
4347391

.
osa-u.5
for
9266204

.
osa-u.5
for
4328444

.
zma-u.5
for
100277570

.
zma-u.5
for
100273685

.
zma-u.5
for
100281601

.


Ortholog ID: 623
Species ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol NF-YC9 NF-YC04 NF-YC07 CIP2b CIP2a LOC4341785 LOC9266204 LOC100281601 LOC100273685 LOC103843367 LOC103873128 LOC100266507 LOC100243367 LOC7454724 LOC11410747 LOC11429705 LOC123167754 LOC123092752 LOC123408918 LOC123399206 LOC107920899 LOC107939338 LOC106406926 LOC106353197 CHLRE_12g556400v5 LOC8055845 LOC8061586 LOC102587685 LOC102603380 LOC102628121 LOC102609372 LOC100840477 LOC100842288 LOC107832065 LOC107797519
Function* nuclear factor Y, subunit C9 nuclear factor Y transcription factor family protein nuclear factor Y transcription factor family protein CONSTANS interacting protein 2b CONSTANS interacting protein 2a nuclear transcription factor Y subunit C-4-like nuclear transcription factor Y subunit C-2-like nuclear transcription factor Y subunit C-1 nuclear transcription factor Y subunit C-2 nuclear transcription factor Y subunit C-9 nuclear transcription factor Y subunit C-1 nuclear transcription factor Y subunit C-3 nuclear transcription factor Y subunit C-2 nuclear transcription factor Y subunit C-1 nuclear transcription factor Y subunit C-3 nuclear transcription factor Y subunit C-1 nuclear transcription factor Y subunit C-6 nuclear transcription factor Y subunit C-2 nuclear transcription factor Y subunit C-6-like nuclear transcription factor Y subunit C-6-like nuclear transcription factor Y subunit C-2 nuclear transcription factor Y subunit C-9 nuclear transcription factor Y subunit C-4 nuclear transcription factor Y subunit C-2 uncharacterized protein nuclear transcription factor Y subunit C-6 nuclear transcription factor Y subunit C-4 nuclear transcription factor Y subunit C-9-like nuclear transcription factor Y subunit C-1-like nuclear transcription factor Y subunit C-2 nuclear transcription factor Y subunit C-9 nuclear transcription factor Y subunit C-4 nuclear transcription factor Y subunit C-6 nuclear transcription factor Y subunit C-3 nuclear transcription factor Y subunit C-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 9
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 3
zma00196 Photosynthesis - antenna proteins 2
zma00710 Carbon fixation by Calvin cycle 2
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
zma04120 Ubiquitin mediated proteolysis 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 3
bra03083 Polycomb repressive complex 2
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 3
bra00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo00860 Porphyrin metabolism 3
ppo01240 Biosynthesis of cofactors 3
ppo04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00460 Cyanoamino acid metabolism 3
tae00500 Starch and sucrose metabolism 3
tae00999 Biosynthesis of various plant secondary metabolites 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00564 Glycerophospholipid metabolism 2
bna00100 Steroid biosynthesis 2
bna04142 Lysosome 2
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
bdi03410 Base excision repair 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837417 100818447 100776494 778249 778347 4341785 9266204 100281601 100273685 103843367 103873128 100266507 100243367 7454724 11410747 11429705 123167754 123092752 123408918 123399206 107920899 107939338 106406926 106353197 5719754 8055845 8061586 102587685 102603380 102628121 102609372 100840477 100842288 107832065 107797519
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