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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5   4340969   protein CUP-SHAPED COTYLEDON 1 
 zma-u.5   103629107   uncharacterized LOC103629107 
 zma-u.5   606437   protein CUP-SHAPED COTYLEDON 1 
 sbi-r.1   8082811   protein CUP-SHAPED COTYLEDON 1 
 gma-u.5   100805987   protein CUP-SHAPED COTYLEDON 2 
 sly-u.5   NAM   NO APICAL MERISTEM 
 bra-r.6   103859613   protein CUP-SHAPED COTYLEDON 1 
 ghi-r.1   107895256   protein CUP-SHAPED COTYLEDON 2 
 ghi-r.1   107917066   protein CUP-SHAPED COTYLEDON 2 
 ghi-r.1   107935629   protein CUP-SHAPED COTYLEDON 2-like 
 sot-r.1   NAM   NO APICAL MERISTEM 
 nta-r.1   107800137   protein CUP-SHAPED COTYLEDON 2-like 
 nta-r.1   107826703   protein CUP-SHAPED COTYLEDON 2-like 

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Top 50 coexpressed genes to 4340969 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4340969 (osa-u.5 coexpression data)

CoexMap"100821586"


bdiLOC100821586 | Entrez gene ID : 100821586      
Species osa zma sbi gma sly bra ghi sot nta hvu vvi bdi tae bna ppo cre mtr ath cit
Paralog 1 2 1 1 1 1 3 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1579 genes)  IEA  
GO CC
GO MF
GO:0003677 [list] [network] DNA binding  (1744 genes)  IEA  
Protein XP_003563845.1 [sequence] [blastp]
XP_024313144.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  mito 3,  chlo_mito 3,  nucl 2  (predict for XP_003563845.1)
chlo 3,  mito 3,  chlo_mito 3,  nucl 2  (predict for XP_024313144.1)
Subcellular
localization
TargetP
other 9,  mito 3  (predict for XP_003563845.1)
other 9,  mito 3  (predict for XP_024313144.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.5
for
4340969
zma-u.5
for
103629107
zma-u.5
for
606437
sbi-r.1
for
8082811
gma-u.5
for
100805987
sly-u.5
for
NAM
bra-r.6
for
103859613
ghi-r.1
for
107895256
ghi-r.1
for
107917066
ghi-r.1
for
107935629
sot-r.1
for
NAM
nta-r.1
for
107800137
nta-r.1
for
107826703


Ortholog ID: 4077
Species osa zma zma sbi gma sly bra ghi ghi ghi sot nta nta
Symbol LOC4340969 LOC103629107 LOC606437 LOC8082811 LOC100805987 NAM LOC103859613 LOC107917066 LOC121204753 LOC107918931 NAM LOC107800137 LOC107826703
Function* protein CUP-SHAPED COTYLEDON 1 uncharacterized LOC103629107 protein CUP-SHAPED COTYLEDON 1 protein CUP-SHAPED COTYLEDON 1 protein CUP-SHAPED COTYLEDON 2 NO APICAL MERISTEM protein CUP-SHAPED COTYLEDON 1 protein CUP-SHAPED COTYLEDON 2 protein CUP-SHAPED COTYLEDON 2 protein CUP-SHAPED COTYLEDON 2-like NO APICAL MERISTEM protein CUP-SHAPED COTYLEDON 2-like protein CUP-SHAPED COTYLEDON 2-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00280 Valine, leucine and isoleucine degradation 2
sbi00410 beta-Alanine metabolism 2
sbi00640 Propanoate metabolism 2
sbi01200 Carbon metabolism 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 2
gma00071 Fatty acid degradation 2
gma01212 Fatty acid metabolism 2
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4340969 103629107 606437 8082811 100805987 100301934 103859613 107917066 121204753 107918931 102577609 107800137 107826703
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