ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100825522	AP2/ERF and B3 domain-containing transcription factor ARF14-like
bdi-r.1	100828894	floral homeotic protein APETALA 2
bdi-r.1	100839861	floral homeotic protein APETALA 2
bdi-r.1	100831490	floral homeotic protein APETALA 2
tae-r.2	543360	APETALA2-like protein 2
tae-r.2	543013	APETALA2-like protein 1
hvu-r.1	123428148	APETALA2-like protein 5
hvu-r.1	123453013	APETALA2-like protein 2
hvu-r.1	123403691	APETALA2-like protein 1
osa-u.5	9269072	AP2-like ethylene-responsive transcription factor TOE3
osa-u.5	9271266	ethylene-responsive transcription factor RAP2-7
osa-u.5	4342787	APETALA2-like protein 3
zma-u.5	100280414	uncharacterized LOC100280414
zma-u.5	732805	glossy15
zma-u.5	103635944	APETALA2-like protein 1
sbi-r.1	8068151	ethylene-responsive transcription factor RAP2-7
sbi-r.1	8057377	floral homeotic protein APETALA 2
sbi-r.1	8079577	AP2-like ethylene-responsive transcription factor TOE3
ath-u.5	SMZ	Integrase-type DNA-binding superfamily protein
ath-u.5	TOE3	target of early activation tagged (EAT) 3
ath-u.5	RAP2.7	uncharacterized protein
gma-u.5	100792442	floral homeotic protein APETALA 2
gma-u.5	100794096	floral homeotic protein APETALA 2
gma-u.5	100796271	ethylene-responsive transcription factor RAP2-7
sly-u.5	AP2b	APETALA2-like protein AP2b
sly-u.5	AP2a	APETALA2a
sly-u.5	AP2d	APETALA2-like protein AP2d
bra-r.6	103862524	floral homeotic protein APETALA 2
bra-r.6	103862143	floral homeotic protein APETALA 2
bra-r.6	103829752	ethylene-responsive transcription factor RAP2-7
vvi-u.5	AP2	transcription factor APETALA2
vvi-u.5	100246815	ethylene-responsive transcription factor RAP2-7
ppo-u.5	7465291	APETALA2-like protein 3
ppo-u.5	7489744	AP2-like ethylene-responsive transcription factor TOE3
ppo-u.5	18100239	APETALA2-like protein 3
mtr-u.5	25493474	floral homeotic protein APETALA 2
mtr-u.5	11425769	APETALA2-like protein 2
mtr-u.5	11417561	AP2-like ethylene-responsive transcription factor TOE3
ghi-r.1	107913226	floral homeotic protein APETALA 2
ghi-r.1	107931690	floral homeotic protein APETALA 2
ghi-r.1	107909317	floral homeotic protein APETALA 2
bna-r.1	106437467	ethylene-responsive transcription factor RAP2-7
bna-r.1	106438341	ethylene-responsive transcription factor RAP2-7-like
bna-r.1	106439870	AP2-like ethylene-responsive transcription factor SMZ
sot-r.1	102605336	ethylene-responsive transcription factor RAP2-7-like
sot-r.1	102606071	ethylene-responsive transcription factor RAP2-7-like
sot-r.1	102589826	AP2-like ethylene-responsive transcription factor TOE3
cit-r.1	102621126	floral homeotic protein APETALA 2-like
cit-r.1	102621401	APETALA2-like protein 2
cit-r.1	102622542	floral homeotic protein APETALA 2
nta-r.1	107819773	ethylene-responsive transcription factor RAP2-7
nta-r.1	107764494	floral homeotic protein APETALA 2
nta-r.1	107778909	AP2-like ethylene-responsive transcription factor TOE3
cre-r.1	CHLRE_08g383000v5	uncharacterized protein
cre-r.1	CHLRE_08g385350v5	uncharacterized protein
cre-r.1	CHLRE_01g009575v5	uncharacterized protein

Top 50 coexpressed genes to 100825522 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100825522 (bdi-r.1 coexpression data)

CoexMap"100825522"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1579 genes)

IEA

GO CC

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity	(1057 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1744 genes)	IEA

Protein

XP_010234576.1 [sequence] [blastp]
XP_010234577.1 [sequence] [blastp]
XP_010234578.1 [sequence] [blastp]
XP_010234579.1 [sequence] [blastp]
XP_010234580.1 [sequence] [blastp]
XP_014755859.1 [sequence] [blastp]
XP_014755860.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 1, chlo 1, mito 1, pero 1, cysk 1, chlo_mito 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_010234576.1)
nucl 6, cyto 1, chlo 1, mito 1, pero 1, cysk 1, chlo_mito 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_010234577.1)
nucl 6, cyto 1, chlo 1, mito 1, pero 1, cysk 1, chlo_mito 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_010234578.1)
nucl 7, cyto_nucl 4, chlo 1	(predict for XP_010234579.1)
nucl 7, cyto_nucl 4, chlo 1	(predict for XP_010234580.1)
nucl 6, cyto 1, chlo 1, mito 1, pero 1, cysk 1, chlo_mito 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_014755859.1)
nucl 6, cyto 1, chlo 1, mito 1, pero 1, cysk 1, chlo_mito 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_014755860.1)

Subcellular
localization
TargetP

mito 8, other 4	(predict for XP_010234576.1)
mito 8, other 4	(predict for XP_010234577.1)
mito 8, other 4	(predict for XP_010234578.1)
mito 9, other 3	(predict for XP_010234579.1)
mito 9, other 3	(predict for XP_010234580.1)
mito 8, other 4	(predict for XP_014755859.1)
mito 8, other 4	(predict for XP_014755860.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100825522	bdi-r.1 for 100828894	bdi-r.1 for 100839861	bdi-r.1 for 100831490	tae-r.2 for 543360	tae-r.2 for 543013	hvu-r.1 for 123428148	hvu-r.1 for 123453013	hvu-r.1 for 123403691	osa-u.5 for 9269072	osa-u.5 for 9271266	osa-u.5 for 4342787	zma-u.5 for 100280414	zma-u.5 for 732805	zma-u.5 for 103635944	sbi-r.1 for 8068151	sbi-r.1 for 8057377	sbi-r.1 for 8079577	ath-u.5 for SMZ	ath-u.5 for TOE3	ath-u.5 for RAP2.7	gma-u.5 for 100792442	gma-u.5 for 100794096	gma-u.5 for 100796271	sly-u.5 for AP2b	sly-u.5 for AP2a	sly-u.5 for AP2d	bra-r.6 for 103862524	bra-r.6 for 103862143	bra-r.6 for 103829752	vvi-u.5 for AP2	vvi-u.5 for 100246815	ppo-u.5 for 7465291	ppo-u.5 for 7489744	ppo-u.5 for 18100239	mtr-u.5 for 25493474	mtr-u.5 for 11425769	mtr-u.5 for 11417561	ghi-r.1 for 107913226	ghi-r.1 for 107931690	ghi-r.1 for 107909317	bna-r.1 for 106437467	bna-r.1 for 106438341	bna-r.1 for 106439870	sot-r.1 for 102605336	sot-r.1 for 102606071	sot-r.1 for 102589826	cit-r.1 for 102621126	cit-r.1 for 102621401	cit-r.1 for 102622542	nta-r.1 for 107819773	nta-r.1 for 107764494	nta-r.1 for 107778909	cre-r.1 for CHLRE_08g383000v5	cre-r.1 for CHLRE_08g385350v5	cre-r.1 for CHLRE_01g009575v5

Ortholog

Ortholog ID: 395

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

SMZ

SNZ

TOE2

LOC100797238

LOC100808212

LOC100788303

AP2c

AP2e

AP2

Function^*

AP2/ERF and B3 domain-containing transcription factor ARF14-like

floral homeotic protein APETALA 2

APETALA2-like protein 1

APETALA2-like protein 2

APETALA2-like protein 5

APETALA2-like protein 2

APETALA2-like protein 4

AP2-like ethylene-responsive transcription factor TOE3

APETALA2-like protein 3

uncharacterized LOC100280414

glossy15

sister of indeterminate spikelet 1

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

ethylene-responsive transcription factor RAP2-7

Integrase-type DNA-binding superfamily protein

target of early activation tagged (EAT) 2

APETALA2-like protein 3

ethylene-responsive transcription factor RAP2-7

APETALA2-like protein AP2c

APETALA2-like protein AP2e

ethylene-responsive transcription factor RAP2-7-like

AP2-like ethylene-responsive transcription factor TOE3

AP2-like ethylene-responsive transcription factor TOE2

transcription factor APETALA2

ethylene-responsive transcription factor RAP2-7

APETALA2-like protein 3

AP2-like ethylene-responsive transcription factor TOE3

floral homeotic protein APETALA 2

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2-like

floral homeotic protein APETALA 2

AP2-like ethylene-responsive transcription factor TOE3

ethylene-responsive transcription factor RAP2-7-like

floral homeotic protein APETALA 2

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

AP2-like ethylene-responsive transcription factor TOE3

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

AP2-like ethylene-responsive transcription factor TOE3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	4
zma00500	Starch and sucrose metabolism	2
zma01200	Carbon metabolism	2
zma01210	2-Oxocarboxylic acid metabolism	2
zma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	4
sly00908	Zeatin biosynthesis	3
sly00996	Biosynthesis of various alkaloids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00030	Pentose phosphate pathway	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	2
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00920	Sulfur metabolism	9
ghi01320	Sulfur cycle	7
ghi00230	Purine metabolism	4
ghi00261	Monobactam biosynthesis	4
ghi00450	Selenocompound metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00195	Photosynthesis	2
sot03010	Ribosome	2
sot00785	Lipoic acid metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00640	Propanoate metabolism	2
cit01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00592	alpha-Linolenic acid metabolism	5
cit04146	Peroxisome	3
cit00071	Fatty acid degradation	2
cit01040	Biosynthesis of unsaturated fatty acids	2
cit01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00010	Glycolysis / Gluconeogenesis	2
cit00071	Fatty acid degradation	2
cit00350	Tyrosine metabolism	2
cit00620	Pyruvate metabolism	2
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre02010	ABC transporters	2

Expression

Expression pattern

Entrez Gene ID^*

100825522

100839861

100831490

543013

123123462

123428148

123453013

123409793

9269072

4342787

100280414

732805

100271892

8068151

8057377

8068364

824664

818510

836134

100797238

100808212

100788303

100736534

100736535

101259280

103829531

103851522

103845425

100268051

100246815

7465291

18100239

7489618

11417561

11407832

11406478

107913226

107931690

107959062

125594129

106423299

106366778

102605336

102582568

102579807

102622542

102627474

102606994

107764494

107803429

107810888

5719829

5725844

5725812

The preparation time of this page was 0.2 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	3	3	3	3	3	3	3	3	2	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100825522 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100825522 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**