ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100832776	lipoxygenase 2.3, chloroplastic
bdi-r.1	100821730	probable lipoxygenase 8, chloroplastic
bdi-r.1	100824090	lipoxygenase 2.3, chloroplastic
tae-r.2	123101959	lipoxygenase 2.1, chloroplastic
tae-r.2	123132647	lipoxygenase 2.3, chloroplastic
tae-r.2	123110078	lipoxygenase 2.1, chloroplastic
hvu-r.1	123395664	lipoxygenase 2.1, chloroplastic
hvu-r.1	123401613	lipoxygenase 2.3, chloroplastic
osa-u.5	4328603	lipoxygenase 2.3, chloroplastic
osa-u.5	4345993	lipoxygenase 7, chloroplastic-like
osa-u.5	4345994	probable lipoxygenase 8, chloroplastic
zma-u.5	103642039	probable lipoxygenase 8, chloroplastic
zma-u.5	lox11	linoleate 13S-lipoxygenase11
zma-u.5	lox10	linoleate 13S-lipoxygenase10
sbi-r.1	8055177	probable lipoxygenase 8, chloroplastic
sbi-r.1	110434540	lipoxygenase 2.3, chloroplastic-like
ath-u.5	LOX2	lipoxygenase 2
gma-u.5	100782277	linoleate 13S-lipoxygenase 2-1, chloroplastic
gma-u.5	106794093	linoleate 13S-lipoxygenase 2-1, chloroplastic
gma-u.5	100809699	linoleate 13S-lipoxygenase 2-1, chloroplastic
sly-u.5	101244897	linoleate 13S-lipoxygenase 2-1, chloroplastic
sly-u.5	loxF	lipoxygenase
sly-u.5	loxC	lipoxygenase
bra-r.6	103830995	lipoxygenase 2, chloroplastic
bra-r.6	103852169	lipoxygenase 2, chloroplastic
bra-r.6	103830997	lipoxygenase 2, chloroplastic
vvi-u.5	100262173	linoleate 13S-lipoxygenase 2-1, chloroplastic
vvi-u.5	100255333	linoleate 13S-lipoxygenase 2-1, chloroplastic
ppo-u.5	7496049	linoleate 13S-lipoxygenase 2-1, chloroplastic
ppo-u.5	18094302	linoleate 13S-lipoxygenase 2-1, chloroplastic
ppo-u.5	7496048	linoleate 13S-lipoxygenase 2-1, chloroplastic
mtr-u.5	11442192	linoleate 13S-lipoxygenase 2-1, chloroplastic
mtr-u.5	25492621	linoleate 13S-lipoxygenase 2-1, chloroplastic
mtr-u.5	25491116	linoleate 13S-lipoxygenase 2-1, chloroplastic
ghi-r.1	107959326	linoleate 13S-lipoxygenase 2-1, chloroplastic
ghi-r.1	107906745	linoleate 13S-lipoxygenase 2-1, chloroplastic
bna-r.1	106380862	lipoxygenase 2, chloroplastic-like
bna-r.1	106361173	lipoxygenase 2, chloroplastic
bna-r.1	111211798	lipoxygenase 2, chloroplastic-like
sot-r.1	102594007	linoleate 13S-lipoxygenase 2-1, chloroplastic-like
sot-r.1	102596122	linoleate 13S-lipoxygenase 2-1, chloroplastic-like
sot-r.1	102596456	linoleate 13S-lipoxygenase 2-1, chloroplastic-like
cit-r.1	102625429	linoleate 13S-lipoxygenase 2-1, chloroplastic
cit-r.1	102625710	linoleate 13S-lipoxygenase 2-1, chloroplastic
cit-r.1	102625997	linoleate 13S-lipoxygenase 2-1, chloroplastic
nta-r.1	107763642	linoleate 13S-lipoxygenase 2-1, chloroplastic-like
nta-r.1	107778472	linoleate 13S-lipoxygenase 2-1, chloroplastic-like
nta-r.1	107820590	linoleate 13S-lipoxygenase 2-1, chloroplastic-like

Top 50 coexpressed genes to 100832776 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100832776 (bdi-r.1 coexpression data)

CoexMap"100832776"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi00591 [list] [network] Linoleic acid metabolism (13 genes)

bdi00592 [list] [network] alpha-Linolenic acid metabolism (44 genes)

GO BP

GO:0034440 [list] [network] lipid oxidation

(30 genes)

IEA

GO CC

GO MF

GO:0016702 [list] [network] oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	(35 genes)	IEA
GO:0046872 [list] [network] metal ion binding	(1763 genes)	IEA
GO:0005515 [list] [network] protein binding	(4040 genes)	IEA

Protein

XP_003571227.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9

(predict for XP_003571227.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_003571227.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100832776	bdi-r.1 for 100821730	bdi-r.1 for 100824090	tae-r.2 for 123101959	tae-r.2 for 123132647	tae-r.2 for 123110078	hvu-r.1 for 123395664	hvu-r.1 for 123401613	osa-u.5 for 4328603	osa-u.5 for 4345993	osa-u.5 for 4345994	zma-u.5 for 103642039	zma-u.5 for lox11	zma-u.5 for lox10	sbi-r.1 for 8055177	sbi-r.1 for 110434540	ath-u.5 for LOX2	gma-u.5 for 100782277	gma-u.5 for 106794093	gma-u.5 for 100809699	sly-u.5 for 101244897	sly-u.5 for loxF	sly-u.5 for loxC	bra-r.6 for 103830995	bra-r.6 for 103852169	bra-r.6 for 103830997	vvi-u.5 for 100262173	vvi-u.5 for 100255333	ppo-u.5 for 7496049	ppo-u.5 for 18094302	ppo-u.5 for 7496048	mtr-u.5 for 11442192	mtr-u.5 for 25492621	mtr-u.5 for 25491116	ghi-r.1 for 107959326	ghi-r.1 for 107906745	bna-r.1 for 106380862	bna-r.1 for 106361173	bna-r.1 for 111211798	sot-r.1 for 102594007	sot-r.1 for 102596122	sot-r.1 for 102596456	cit-r.1 for 102625429	cit-r.1 for 102625710	cit-r.1 for 102625997	nta-r.1 for 107763642	nta-r.1 for 107778472	nta-r.1 for 107820590

Ortholog

Ortholog ID: 1058

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

lox11

lox10

LOX2

loxF

loxC

Function^*

lipoxygenase 2.3, chloroplastic

probable lipoxygenase 8, chloroplastic

lipoxygenase 2.3, chloroplastic

lipoxygenase 2.1, chloroplastic

lipoxygenase 2.3, chloroplastic

lipoxygenase 2.2, chloroplastic

lipoxygenase 2.1, chloroplastic

lipoxygenase 2.3, chloroplastic

probable lipoxygenase 8, chloroplastic

lipoxygenase 2.3, chloroplastic

lipoxygenase 7, chloroplastic-like

probable lipoxygenase 8, chloroplastic

linoleate 13S-lipoxygenase11

linoleate 13S-lipoxygenase10

probable lipoxygenase 8, chloroplastic

lipoxygenase 2.3, chloroplastic-like

lipoxygenase 2