ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100834117	far upstream element-binding protein 2
bdi-r.1	100835547	far upstream element-binding protein 1
tae-r.2	123165864	far upstream element-binding protein 2
tae-r.2	123064681	poly(rC)-binding protein 1
tae-r.2	123084267	uncharacterized LOC123084267
hvu-r.1	123411206	far upstream element-binding protein 1-like
osa-u.5	9266838	uncharacterized LOC9266838
osa-u.5	4328770	uncharacterized LOC4328770
zma-u.5	100279814	uncharacterized LOC100279814
zma-u.5	100273619	KH domain-containing protein
zma-u.5	100191655	KH domain-containing protein
sbi-r.1	110437096	far upstream element-binding protein 1-like
sbi-r.1	8059182	far upstream element-binding protein 1
sbi-r.1	8073784	far upstream element-binding protein 2
ath-u.5	AT2G25970	KH domain-containing protein
ath-u.5	AT4G10070	KH domain-containing protein
ath-u.5	AT1G33680	KH domain-containing protein
gma-u.5	100800173	far upstream element-binding protein 2
gma-u.5	100797476	far upstream element-binding protein 1
gma-u.5	100786134	far upstream element-binding protein 1
sly-u.5	101267010	uncharacterized LOC101267010
sly-u.5	101264287	uncharacterized LOC101264287
bra-r.6	103842167	far upstream element-binding protein 1
bra-r.6	103840055	far upstream element-binding protein 2
bra-r.6	103864711	far upstream element-binding protein 1
vvi-u.5	100259454	uncharacterized LOC100259454
vvi-u.5	100253453	uncharacterized LOC100253453
ppo-u.5	18100653	uncharacterized LOC18100653
ppo-u.5	7455252	uncharacterized LOC7455252
ppo-u.5	7463740	uncharacterized LOC7463740
mtr-u.5	11420367	far upstream element-binding protein 2
mtr-u.5	11417818	splicing factor 3A subunit 2
mtr-u.5	11423244	far upstream element-binding protein 1
ghi-r.1	107957632	far upstream element-binding protein 2
ghi-r.1	107914021	far upstream element-binding protein 2
ghi-r.1	107919846	far upstream element-binding protein 2
bna-r.1	106400940	far upstream element-binding protein 1-like
bna-r.1	106413676	far upstream element-binding protein 1-like
bna-r.1	106415237	far upstream element-binding protein 2
sot-r.1	102583099	far upstream element-binding protein 2
sot-r.1	102578344	far upstream element-binding protein 2
sot-r.1	102595397	far upstream element-binding protein 2-like
cit-r.1	102609390	uncharacterized LOC102609390
cit-r.1	102620563	uncharacterized LOC102620563
nta-r.1	107829954	uncharacterized LOC107829954
nta-r.1	107814204	uncharacterized LOC107814204
nta-r.1	107801401	uncharacterized LOC107801401
cre-r.1	CHLRE_06g250800v5	uncharacterized protein

Top 50 coexpressed genes to 100834117 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100834117 (bdi-r.1 coexpression data)

CoexMap"100834117"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0010468 [list] [network] regulation of gene expression

(1881 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(4615 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(271 genes)

IEA

Protein

XP_003573287.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 1, plas 1, pero 1, cyto_E.R. 1

(predict for XP_003573287.1)

Subcellular
localization
TargetP

other 7, chlo 4

(predict for XP_003573287.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100834117	bdi-r.1 for 100835547	tae-r.2 for 123165864	tae-r.2 for 123064681	tae-r.2 for 123084267	hvu-r.1 for 123411206	osa-u.5 for 9266838	osa-u.5 for 4328770	zma-u.5 for 100279814	zma-u.5 for 100273619	zma-u.5 for 100191655	sbi-r.1 for 110437096	sbi-r.1 for 8059182	sbi-r.1 for 8073784	ath-u.5 for AT2G25970	ath-u.5 for AT4G10070	ath-u.5 for AT1G33680	gma-u.5 for 100800173	gma-u.5 for 100797476	gma-u.5 for 100786134	sly-u.5 for 101267010	sly-u.5 for 101264287	bra-r.6 for 103842167	bra-r.6 for 103840055	bra-r.6 for 103864711	vvi-u.5 for 100259454	vvi-u.5 for 100253453	ppo-u.5 for 18100653	ppo-u.5 for 7455252	ppo-u.5 for 7463740	mtr-u.5 for 11420367	mtr-u.5 for 11417818	mtr-u.5 for 11423244	ghi-r.1 for 107957632	ghi-r.1 for 107914021	ghi-r.1 for 107919846	bna-r.1 for 106400940	bna-r.1 for 106413676	bna-r.1 for 106415237	sot-r.1 for 102583099	sot-r.1 for 102578344	sot-r.1 for 102595397	cit-r.1 for 102609390	cit-r.1 for 102620563	nta-r.1 for 107829954	nta-r.1 for 107814204	nta-r.1 for 107801401	cre-r.1 for CHLRE_06g250800v5

Ortholog

Ortholog ID: 1531

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

far upstream element-binding protein 2

far upstream element-binding protein 1

far upstream element-binding protein 2

far upstream element-binding protein 1-like

uncharacterized LOC9266838

uncharacterized LOC4328770

uncharacterized LOC100279814

KH domain-containing protein

uncharacterized LOC100193964

far upstream element-binding protein 1-like

far upstream element-binding protein 1

far upstream element-binding protein 2

KH domain-containing protein

far upstream element-binding protein 1

uncharacterized LOC101267010

uncharacterized LOC101264287

far upstream element-binding protein 1

far upstream element-binding protein 2

far upstream element-binding protein 1

uncharacterized LOC100259454

uncharacterized LOC100253453

uncharacterized LOC7455252

uncharacterized LOC7463740

uncharacterized LOC18104348

far upstream element-binding protein 1

far upstream element-binding protein 2

far upstream element-binding protein 1

far upstream element-binding protein 1-like

far upstream element-binding protein 1

far upstream element-binding protein 2

far upstream element-binding protein 2-like

uncharacterized LOC102609390

uncharacterized LOC102620563

uncharacterized LOC107801401

uncharacterized LOC107779634

uncharacterized LOC107779386

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	2
hvu00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03015	mRNA surveillance pathway	3
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03410	Base excision repair	2
sbi03040	Spliceosome	2
sbi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	6
ath03013	Nucleocytoplasmic transport	3
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03015	mRNA surveillance pathway	3
ath04120	Ubiquitin mediated proteolysis	2
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03018	RNA degradation	2
ath03082	ATP-dependent chromatin remodeling	2
ath03083	Polycomb repressive complex	2
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03082	ATP-dependent chromatin remodeling	3
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03013	Nucleocytoplasmic transport	2
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	7
ppo00970	Aminoacyl-tRNA biosynthesis	2
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi03460	Fanconi anemia pathway	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03015	mRNA surveillance pathway	3
cit03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	3
nta03018	RNA degradation	3
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	11

Expression

Expression pattern

Entrez Gene ID^*

100834117

100835547

123147603

123158361

123144471

123411206

123396419

9266838

4328770

100279814

100191655

100193964

110437096

8059182

8073784

817137

826598

840259

100797476

100782717

100813135

101267010

101264287

103842167

103840055

103864711

100259454

100253453

7455252

7463740

18104348

11423244

11432333

11439962

107914021

107961657

107895341

106413676

106448684

106368546

102583099

102578344

102595397

102609390

102620563

107801401

107779634

107779386

5722206

The preparation time of this page was 0.2 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	1	2	3	3	3	3	2	3	2	3	3	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100834117 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100834117 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**