ATTED-II : GeneCoexpression result

Species	Gene	Description
bdi-r.1	100836870	thioredoxin-like 3-2, chloroplastic
tae-r.2	123139890	thioredoxin-like 3-2, chloroplastic
tae-r.2	123129014	thioredoxin-like 3-2, chloroplastic
tae-r.2	123146190	thioredoxin-like 3-2, chloroplastic
hvu-r.1	123403833	thioredoxin-like 3-2, chloroplastic
osa-u.5	4331159	thioredoxin-like 3-2, chloroplastic
zma-u.5	100193002	uncharacterized LOC100193002
sbi-r.1	8055317	thioredoxin-like 3-2, chloroplastic
ath-u.5	WCRKC2	WCRKC thioredoxin 2
gma-u.5	100527081	uncharacterized LOC100527081
sly-u.5	101245714	thioredoxin-like 3-2, chloroplastic
bra-r.6	103847316	thioredoxin-like 3-2, chloroplastic
vvi-u.5	100247940	thioredoxin-like 3-2, chloroplastic
ppo-u.5	7463446	thioredoxin-like 3-2, chloroplastic
ppo-u.5	112328434	thioredoxin-like 3-2, chloroplastic
ghi-r.1	107957360	thioredoxin-like 3-2, chloroplastic
ghi-r.1	107942770	thioredoxin-like 3-2, chloroplastic
bna-r.1	106372684	thioredoxin-like 3-2, chloroplastic
bna-r.1	106372528	thioredoxin-like 3-2, chloroplastic
sot-r.1	102599881	thioredoxin-like 3-2, chloroplastic
cit-r.1	102625285	thioredoxin-like 3-2, chloroplastic
nta-r.1	107770047	thioredoxin-like 3-2, chloroplastic
nta-r.1	107768494	thioredoxin-like 3-2, chloroplastic

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009570 [list] [network] chloroplast stroma

(95 genes)

IEA

GO MF

Protein

XP_003570411.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, cyto 1, mito 1

(predict for XP_003570411.1)

Subcellular
localization
TargetP

chlo 8

(predict for XP_003570411.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100836870	tae-r.2 for 123139890	tae-r.2 for 123129014	tae-r.2 for 123146190	hvu-r.1 for 123403833	osa-u.5 for 4331159	zma-u.5 for 100193002	sbi-r.1 for 8055317	ath-u.5 for WCRKC2	gma-u.5 for 100527081	sly-u.5 for 101245714	bra-r.6 for 103847316	vvi-u.5 for 100247940	ppo-u.5 for 7463446	ppo-u.5 for 112328434	ghi-r.1 for 107957360	ghi-r.1 for 107942770	bna-r.1 for 106372684	bna-r.1 for 106372528	sot-r.1 for 102599881	cit-r.1 for 102625285	nta-r.1 for 107770047	nta-r.1 for 107768494

Ortholog

Ortholog ID: 11392

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

ghi

bna

sot

cit

nta

Symbol

WCRKC2

Function^*

thioredoxin-like 3-2, chloroplastic

uncharacterized LOC100193002

thioredoxin-like 3-2, chloroplastic

WCRKC thioredoxin 2

uncharacterized LOC100527081

thioredoxin-like 3-2, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01212	Fatty acid metabolism	3
sbi01200	Carbon metabolism	2
sbi00230	Purine metabolism	2
sbi01232	Nucleotide metabolism	2
sbi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	2
ghi03420	Nucleotide excision repair	2
ghi00020	Citrate cycle (TCA cycle)	2
ghi00620	Pyruvate metabolism	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00020	Citrate cycle (TCA cycle)	3
ghi00620	Pyruvate metabolism	3
ghi01200	Carbon metabolism	3
ghi03020	RNA polymerase	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00562	Inositol phosphate metabolism	3
bna04070	Phosphatidylinositol signaling system	3
bna03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00562	Inositol phosphate metabolism	5
bna04070	Phosphatidylinositol signaling system	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01200	Carbon metabolism	3
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta01200	Carbon metabolism	2
nta04120	Ubiquitin mediated proteolysis	2
nta04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

100836870

123139890

123129014

123146190

123403833

4331159

100193002

8055317

830305

100527081

101245714

103847316

100247940

7463446

112328434

107957360

107942770

106372684

106372528

102599881

102625285

107770047

107768494

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100836870 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100836870 (bdi-r.1 coexpression data)


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	ghi	bna	sot	cit	nta	mtr	cre
Paralog	1	3	1	1	1	1	1	1	1	1	1	2	2	2	1	1	2	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100836870 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100836870 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**