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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   CAD5   probable cinnamyl alcohol dehydrogenase 
 tae-r.2   100682433   probable cinnamyl alcohol dehydrogenase 
 tae-r.2   123127221   probable cinnamyl alcohol dehydrogenase 
 tae-r.2   123136821   probable cinnamyl alcohol dehydrogenase 
 hvu-r.1   123402283   probable cinnamyl alcohol dehydrogenase 
 osa-u.5   4328552   cinnamyl alcohol dehydrogenase 2-like 
 zma-u.5   542663   cinnamyl alcohol dehydrogenase 
 sbi-r.1   110434683   probable cinnamyl alcohol dehydrogenase 
 ath-u.5   ATCAD4   GroES-like zinc-binding alcohol dehydrogenase family protein 
 ath-u.5   CAD5   cinnamyl alcohol dehydrogenase 5 
 gma-u.5   100777558   probable cinnamyl alcohol dehydrogenase 
 gma-u.5   100804892   probable cinnamyl alcohol dehydrogenase 
 sly-u.5   101250635   cinnamyl alcohol dehydrogenase 1 
 bra-r.6   103840386   cinnamyl alcohol dehydrogenase 5 
 bra-r.6   103869453   cinnamyl alcohol dehydrogenase 4 
 bra-r.6   103862330   cinnamyl alcohol dehydrogenase 5 
 vvi-u.5   100262421   probable cinnamyl alcohol dehydrogenase 1 
 vvi-u.5   100257308   probable cinnamyl alcohol dehydrogenase 1 
 ppo-u.5   7490064   probable cinnamyl alcohol dehydrogenase 
 mtr-u.5   25485411   probable cinnamyl alcohol dehydrogenase 
 ghi-r.1   107953373   cinnamyl alcohol dehydrogenase 1 
 ghi-r.1   107935005   cinnamyl alcohol dehydrogenase 1 
 bna-r.1   111208207   cinnamyl alcohol dehydrogenase 5 
 bna-r.1   106428381   cinnamyl alcohol dehydrogenase 4 
 bna-r.1   106400136   cinnamyl alcohol dehydrogenase 5-like 
 sot-r.1   102602480   probable cinnamyl alcohol dehydrogenase 1 
 cit-r.1   CAD   cinnamyl alcohol dehydrogenase 
 nta-r.1   107816761   probable cinnamyl alcohol dehydrogenase 2 
 nta-r.1   107789450   probable cinnamyl alcohol dehydrogenase 1 
 nta-r.1   107763167   putative cinnamyl alcohol dehydrogenase 1 

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Top 50 coexpressed genes to CAD5 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CAD5 (bdi-r.1 coexpression data)

CoexMap"100843666"


bdiCAD5 | Entrez gene ID : 100843666      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 1 1 2 2 1 3 2 1 1 2 3 1 1 3 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi00940 [list] [network] Phenylpropanoid biosynthesis (187 genes)
GO BP
GO:0009809 [list] [network] lignin biosynthetic process  (12 genes)  IEA  
GO CC
GO MF
GO:0045551 [list] [network] cinnamyl-alcohol dehydrogenase activity  (6 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (707 genes)  IEA  
Protein XP_003570974.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_003570974.1)
Subcellular
localization
TargetP
other 8  (predict for XP_003570974.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
CAD5
tae-r.2
for
100682433
tae-r.2
for
123127221
tae-r.2
for
123136821
hvu-r.1
for
123402283
osa-u.5
for
4328552
zma-u.5
for
542663
sbi-r.1
for
110434683
ath-u.5
for
ATCAD4
ath-u.5
for
CAD5
gma-u.5
for
100777558
gma-u.5
for
100804892
sly-u.5
for
101250635
bra-r.6
for
103840386
bra-r.6
for
103869453
bra-r.6
for
103862330
vvi-u.5
for
100262421
vvi-u.5
for
100257308
ppo-u.5
for
7490064
mtr-u.5
for
25485411
ghi-r.1
for
107953373
ghi-r.1
for
107935005
bna-r.1
for
111208207
bna-r.1
for
106428381
bna-r.1
for
106400136
sot-r.1
for
102602480
cit-r.1
for
CAD
nta-r.1
for
107816761
nta-r.1
for
107789450
nta-r.1
for
107763167


Ortholog ID: 6004
Species bdi tae tae tae hvu osa zma sbi ath ath gma gma sly bra bra bra vvi vvi ppo mtr ghi ghi bna bna bna sot cit nta nta nta
Symbol CAD5 LOC100682433 LOC123127221 LOC123136821 LOC123402283 LOC4328552 LOC542663 LOC110434683 ATCAD4 CAD5 LOC100777558 LOC100804892 LOC101250635 LOC103840386 LOC103869453 LOC103862330 LOC100262421 LOC100257308 LOC7490064 LOC25485411 LOC107953373 LOC107935005 LOC111208207 LOC125608518 LOC106394935 LOC102602480 CAD LOC107816761 LOC107789450 LOC107763167
Function* probable cinnamyl alcohol dehydrogenase probable cinnamyl alcohol dehydrogenase probable cinnamyl alcohol dehydrogenase probable cinnamyl alcohol dehydrogenase probable cinnamyl alcohol dehydrogenase cinnamyl alcohol dehydrogenase 2-like cinnamyl alcohol dehydrogenase probable cinnamyl alcohol dehydrogenase GroES-like zinc-binding alcohol dehydrogenase family protein cinnamyl alcohol dehydrogenase 5 probable cinnamyl alcohol dehydrogenase probable cinnamyl alcohol dehydrogenase cinnamyl alcohol dehydrogenase 1 cinnamyl alcohol dehydrogenase 5 cinnamyl alcohol dehydrogenase 4 cinnamyl alcohol dehydrogenase 5 probable cinnamyl alcohol dehydrogenase 1 probable cinnamyl alcohol dehydrogenase 1 probable cinnamyl alcohol dehydrogenase probable cinnamyl alcohol dehydrogenase cinnamyl alcohol dehydrogenase 1 cinnamyl alcohol dehydrogenase 1 cinnamyl alcohol dehydrogenase 5 cinnamyl alcohol dehydrogenase 4 cinnamyl alcohol dehydrogenase 5-like probable cinnamyl alcohol dehydrogenase 1 cinnamyl alcohol dehydrogenase probable cinnamyl alcohol dehydrogenase 2 probable cinnamyl alcohol dehydrogenase 1 putative cinnamyl alcohol dehydrogenase 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 7
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
bdi01230 Biosynthesis of amino acids 7
bdi00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 11
tae00360 Phenylalanine metabolism 3
tae00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 10
tae00360 Phenylalanine metabolism 3
tae00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 11
tae00360 Phenylalanine metabolism 3
tae00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 5
hvu01230 Biosynthesis of amino acids 3
hvu01200 Carbon metabolism 3
hvu00071 Fatty acid degradation 2
hvu00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 6
osa00380 Tryptophan metabolism 2
osa00270 Cysteine and methionine metabolism 2
osa01230 Biosynthesis of amino acids 2
osa00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 8
zma00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 7
sbi00360 Phenylalanine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 12
ath00941 Flavonoid biosynthesis 4
ath00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
ath01230 Biosynthesis of amino acids 4
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 14
ath00941 Flavonoid biosynthesis 4
ath00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ath01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 12
gma00941 Flavonoid biosynthesis 4
gma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 10
gma00941 Flavonoid biosynthesis 4
gma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 4
sly00941 Flavonoid biosynthesis 2
sly00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 15
bra00941 Flavonoid biosynthesis 6
bra00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
bra00360 Phenylalanine metabolism 4
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 11
bra00360 Phenylalanine metabolism 4
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
bra00941 Flavonoid biosynthesis 3
bra00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00380 Tryptophan metabolism 3
vvi00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00670 One carbon pool by folate 8
ppo01230 Biosynthesis of amino acids 5
ppo01240 Biosynthesis of cofactors 5
ppo01200 Carbon metabolism 4
ppo00940 Phenylpropanoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 10
mtr00941 Flavonoid biosynthesis 5
mtr00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 12
ghi00380 Tryptophan metabolism 4
ghi00360 Phenylalanine metabolism 2
ghi00051 Fructose and mannose metabolism 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 8
ghi00380 Tryptophan metabolism 3
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 7
bna00941 Flavonoid biosynthesis 4
bna00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
bna00460 Cyanoamino acid metabolism 3
bna00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00940 Phenylpropanoid biosynthesis 11
sot00380 Tryptophan metabolism 4
sot00941 Flavonoid biosynthesis 4
sot00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 9
cit00941 Flavonoid biosynthesis 4
cit00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 9
nta00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100843666 100682433 123127221 123136821 123402283 4328552 542663 110434683 821479 829572 100777558 100804892 101250635 103840386 103869453 103862330 100262421 100257308 7490064 25485411 107953373 107935005 111208207 125608518 106394935 102602480 102607276 107816761 107789450 107763167
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