ATTED-II : GeneCoexpression result

Species	Gene	Description
bdi-r.1	100824047	acyl-acyl carrier protein thioesterase ATL3, chloroplastic
bdi-r.1	100838144	acyl-acyl carrier protein thioesterase ATL3, chloroplastic
tae-r.2	123190125	acyl-acyl carrier protein thioesterase TE3, chloroplastic
hvu-r.1	123427557	acyl-acyl carrier protein thioesterase TE3, chloroplastic-like
osa-u.5	107276276	acyl-acyl carrier protein thioesterase ATL4, chloroplastic
zma-u.5	100502341	Acyl-acyl carrier protein thioesterase ATL3 chloroplastic
sbi-r.1	8055968	acyl-acyl carrier protein thioesterase ATL3, chloroplastic
ath-u.5	AT1G35250	Thioesterase superfamily protein
ath-u.5	AT1G68260	Thioesterase superfamily protein
gma-u.5	MKS2	methylketone synthase 2
sly-u.5	MKS2b	methylketone synthase IIb
sly-u.5	MKS2	methylketone synthase IIa
bra-r.6	103831241	acyl-acyl carrier protein thioesterase ATL3, chloroplastic
vvi-u.5	100250950	acyl-acyl carrier protein thioesterase TE3, chloroplastic
vvi-u.5	100268132	acyl-acyl carrier protein thioesterase TE3, chloroplastic
ppo-u.5	7466892	acyl-acyl carrier protein thioesterase TE3, chloroplastic
mtr-u.5	11406694	acyl-acyl carrier protein thioesterase ATL3, chloroplastic
ghi-r.1	121228183	acyl-acyl carrier protein thioesterase ATL3, chloroplastic
ghi-r.1	107899614	acyl-acyl carrier protein thioesterase ATL3, chloroplastic
ghi-r.1	121228182	acyl-acyl carrier protein thioesterase ATL3, chloroplastic
sot-r.1	102593733	uncharacterized LOC102593733
sot-r.1	102595992	uncharacterized LOC102595992
cit-r.1	102621919	hypothetical protein
nta-r.1	107801358	acyl-acyl carrier protein thioesterase TE3, chloroplastic
nta-r.1	107827593	acyl-acyl carrier protein thioesterase TE3, chloroplastic
cre-r.1	CHLRE_04g213761v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(552 genes)

IEA

GO MF

GO:0016297 [list] [network] fatty acyl-[ACP] hydrolase activity

(8 genes)

IEA

Protein

XP_003563181.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, mito 1, E.R._vacu 1

(predict for XP_003563181.1)

Subcellular
localization
TargetP

chlo 8

(predict for XP_003563181.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100824047	bdi-r.1 for 100838144	tae-r.2 for 123190125	hvu-r.1 for 123427557	osa-u.5 for 107276276	zma-u.5 for 100502341	sbi-r.1 for 8055968	ath-u.5 for AT1G35250	ath-u.5 for AT1G68260	gma-u.5 for MKS2	sly-u.5 for MKS2b	sly-u.5 for MKS2	bra-r.6 for 103831241	vvi-u.5 for 100250950	vvi-u.5 for 100268132	ppo-u.5 for 7466892	mtr-u.5 for 11406694	ghi-r.1 for 121228183	ghi-r.1 for 107899614	ghi-r.1 for 121228182	sot-r.1 for 102593733	sot-r.1 for 102595992	cit-r.1 for 102621919	nta-r.1 for 107801358	nta-r.1 for 107827593	cre-r.1 for CHLRE_04g213761v5

Ortholog

Ortholog ID: 3282

Species

bdi

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

sot

cit

nta

cre

Symbol

MKS2

MKS2b

MKS2

Function^*

acyl-acyl carrier protein thioesterase ATL3, chloroplastic

acyl-acyl carrier protein thioesterase TE3, chloroplastic-like

acyl-acyl carrier protein thioesterase TE3, chloroplastic

Acyl-acyl carrier protein thioesterase ATL3 chloroplastic

acyl-acyl carrier protein thioesterase ATL3, chloroplastic

Thioesterase superfamily protein

methylketone synthase 2

methylketone synthase IIb

methylketone synthase IIa

acyl-acyl carrier protein thioesterase ATL3, chloroplastic

acyl-acyl carrier protein thioesterase TE3, chloroplastic

acyl-acyl carrier protein thioesterase ATL3, chloroplastic

uncharacterized LOC102593733

uncharacterized LOC102595992

hypothetical protein

acyl-acyl carrier protein thioesterase TE3, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00010	Glycolysis / Gluconeogenesis	3
sbi01200	Carbon metabolism	3
sbi01230	Biosynthesis of amino acids	3
sbi03018	RNA degradation	2
sbi04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01230	Biosynthesis of amino acids	4
ath00541	Biosynthesis of various nucleotide sugars	2
ath01250	Biosynthesis of nucleotide sugars	2
ath00220	Arginine biosynthesis	2
ath01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00620	Pyruvate metabolism	5
gma01200	Carbon metabolism	5
gma00061	Fatty acid biosynthesis	5
gma01212	Fatty acid metabolism	5
gma01240	Biosynthesis of cofactors	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	5
sly04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01230	Biosynthesis of amino acids	3
sly00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
sly00010	Glycolysis / Gluconeogenesis	2
sly00053	Ascorbate and aldarate metabolism	2
sly00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00630	Glyoxylate and dicarboxylate metabolism	3
bra01200	Carbon metabolism	3
bra04141	Protein processing in endoplasmic reticulum	2
bra00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	4
vvi04075	Plant hormone signal transduction	3
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo00860	Porphyrin metabolism	3
ppo01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00061	Fatty acid biosynthesis	8
mtr01212	Fatty acid metabolism	8
mtr00620	Pyruvate metabolism	7
mtr01200	Carbon metabolism	7
mtr01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00061	Fatty acid biosynthesis	4
ghi00780	Biotin metabolism	4
ghi01212	Fatty acid metabolism	4
ghi01240	Biosynthesis of cofactors	4
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00061	Fatty acid biosynthesis	6
ghi00780	Biotin metabolism	6
ghi01212	Fatty acid metabolism	6
ghi01240	Biosynthesis of cofactors	6
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00061	Fatty acid biosynthesis	6
ghi00780	Biotin metabolism	6
ghi01212	Fatty acid metabolism	6
ghi01240	Biosynthesis of cofactors	6
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	4
sot00061	Fatty acid biosynthesis	3
sot01212	Fatty acid metabolism	3
sot03040	Spliceosome	2
sot01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00220	Arginine biosynthesis	2
nta01210	2-Oxocarboxylic acid metabolism	2
nta01230	Biosynthesis of amino acids	2
nta00190	Oxidative phosphorylation	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00220	Arginine biosynthesis	2
nta01210	2-Oxocarboxylic acid metabolism	2
nta01230	Biosynthesis of amino acids	2
nta04144	Endocytosis	2
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00220	Arginine biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

100824047

100838144

123427557

4336608

100502341

8055968

840414

843155

100806931

101260040

100191124

103831241

100250950

100268132

7466892

11406694

121228183

107899614

121228182

102593733

102595992

102621919

107801358

107827593

5728656

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100824047 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100824047 (bdi-r.1 coexpression data)


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	sot	cit	nta	cre	bna
Paralog	2	1	1	1	1	1	2	1	2	1	2	1	1	3	2	1	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100824047 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100824047 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**