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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   J   MADS-box protein JOINTLESS 
 sly-r.6   J   MADS-box protein JOINTLESS 
 sly-m.5   J   MADS-box protein JOINTLESS 
 sly-u.5   101254194   MADS-box protein AGL24 
 sot-r.1   MADS16   MADS16 protein 
 sot-r.1   102605771   MADS-box protein JOINTLESS 
 nta-r.1   107807098   MADS-box protein JOINTLESS 
 nta-r.1   107791218   MADS-box protein JOINTLESS 
 nta-r.1   107761120   MADS-box protein SVP-like 
 ath-u.5   SVP   K-box region and MADS-box transcription factor family protein 
 ath-u.5   AGL24   AGAMOUS-like 24 
 gma-u.5   SVPL   MADS-box protein SVP-like 
 gma-u.5   100808695   MADS-box protein SVP 
 bra-r.6   103862215   MADS-box protein AGL24 
 bra-r.6   103864363   MADS-box protein SVP 
 bra-r.6   103861491   MADS-box protein AGL24 
 vvi-u.5   100260900   MADS-box protein SVP 
 vvi-u.5   100251508   MADS-box protein SVP 
 ppo-u.5   7486551   MADS-box protein JOINTLESS 
 ppo-u.5   7461823   MADS-box protein JOINTLESS 
 ppo-u.5   7480191   MADS-box protein SVP 
 mtr-u.5   11407049   MADS-box protein SVP 
 mtr-u.5   11437402   MADS-box protein AGL24 
 mtr-u.5   11409914   MADS-box protein JOINTLESS 
 ghi-r.1   107924315   MADS-box protein SVP 
 ghi-r.1   107945005   MADS-box protein SVP-like 
 ghi-r.1   107928622   MADS-box protein SVP-like 
 bna-r.1   106446430   MADS-box protein SVP-like 
 bna-r.1   106440793   MADS-box protein AGL24-like 
 bna-r.1   106411741   MADS-box protein SVP 
 cit-r.1   102625387   MADS-box protein JOINTLESS-like 
 cit-r.1   102621460   MADS-box protein JOINTLESS 
 cit-r.1   102609601   MADS-box protein JOINTLESS 
 osa-u.5   4340495   MADS-box transcription factor 55-like 
 osa-u.5   4331872   MADS-box transcription factor 47-like 
 osa-u.5   4330805   MADS-box transcription factor 22-like 
 zma-u.5   542044   m26 protein 
 zma-u.5   542033   MADS19 
 zma-u.5   542035   MADS-box transcription factor 55 
 tae-r.2   100137002   MADS-box transcription factor 55 
 tae-r.2   778396   MADS-box transcription factor 55 
 tae-r.2   780636   MADS-box transcription factor 47 
 hvu-r.1   123449650   MADS-box transcription factor 47-like 
 hvu-r.1   123411400   MADS-box transcription factor 55-like 
 hvu-r.1   123402730   MADS-box transcription factor 22-like 
 sbi-r.1   8080034   MADS-box transcription factor 55 
 sbi-r.1   110434489   MADS-box transcription factor 22 
 sbi-r.1   110431897   MADS-box transcription factor 47-like 
 bdi-r.1   VRT-2   MADS-box transcription factor 55 
 bdi-r.1   100839211   MADS-box transcription factor 22-like 
 bdi-r.1   100827009   MADS-box transcription factor 47-like 

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Top 50 coexpressed genes to J (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to J (sly-u.5 coexpression data)

CoexMap"101245905"


slyJ | Entrez gene ID : 101245905    
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 4 2 3 2 2 3 2 3 3 3 3 3 3 3 3 3 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (133 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (282 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (326 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (499 genes)  IEA  
Protein NP_001306770.1 [sequence] [blastp]
XP_010312646.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for NP_001306770.1)
nucl 10  (predict for XP_010312646.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001306770.1)
other 8  (predict for XP_010312646.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
J
sly-r.6
for
J
sly-m.5
for
J
sly-u.5
for
101254194
sot-r.1
for
MADS16
sot-r.1
for
102605771
nta-r.1
for
107807098
nta-r.1
for
107791218
nta-r.1
for
107761120
ath-u.5
for
SVP
ath-u.5
for
AGL24
gma-u.5
for
SVPL
gma-u.5
for
100808695
bra-r.6
for
103862215
bra-r.6
for
103864363
bra-r.6
for
103861491
vvi-u.5
for
100260900
vvi-u.5
for
100251508
ppo-u.5
for
7486551
ppo-u.5
for
7461823
ppo-u.5
for
7480191
mtr-u.5
for
11407049
mtr-u.5
for
11437402
mtr-u.5
for
11409914
ghi-r.1
for
107924315
ghi-r.1
for
107945005
ghi-r.1
for
107928622
bna-r.1
for
106446430
bna-r.1
for
106440793
bna-r.1
for
106411741
cit-r.1
for
102625387
cit-r.1
for
102621460
cit-r.1
for
102609601
osa-u.5
for
4340495
osa-u.5
for
4331872
osa-u.5
for
4330805
zma-u.5
for
542044
zma-u.5
for
542033
zma-u.5
for
542035
tae-r.2
for
100137002
tae-r.2
for
778396
tae-r.2
for
780636
hvu-r.1
for
123449650
hvu-r.1
for
123411400
hvu-r.1
for
123402730
sbi-r.1
for
8080034
sbi-r.1
for
110434489
sbi-r.1
for
110431897
bdi-r.1
for
VRT-2
bdi-r.1
for
100839211
bdi-r.1
for
100827009


Ortholog ID: 2015
Species sly sly sot sot nta nta nta ath ath gma gma bra bra bra vvi vvi ppo ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna cit cit cit osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi
Symbol J LOC101254194 MADS16 LOC102605771 LOC107807098 LOC107791218 LOC107809739 SVP AGL24 SVPL LOC100808695 LOC103862215 LOC103864363 LOC103837880 LOC100260900 LOC100251508 LOC7486551 LOC7461823 LOC7480191 LOC11407049 LOC11437402 LOC11409914 LOC107945005 LOC107928622 LOC107920922 LOC106446430 LOC106440793 LOC106394683 LOC102625387 LOC102621460 LOC102609601 LOC4340495 LOC4331872 LOC4330805 LOC542033 LOC542035 LOC542034 LOC100137002 LOC123098707 LOC123145554 LOC123449650 LOC123411400 LOC123402730 LOC8080034 LOC110434489 LOC110431897 VRT-2 LOC100839211 LOC100821772
Function* MADS-box protein JOINTLESS MADS-box protein AGL24 MADS16 protein MADS-box protein JOINTLESS MADS-box protein JOINTLESS MADS-box protein JOINTLESS MADS-box protein JOINTLESS K-box region and MADS-box transcription factor family protein AGAMOUS-like 24 MADS-box protein SVP-like MADS-box protein SVP MADS-box protein AGL24 MADS-box protein SVP MADS-box protein SVP MADS-box protein SVP MADS-box protein SVP MADS-box protein JOINTLESS MADS-box protein JOINTLESS MADS-box protein SVP MADS-box protein SVP MADS-box protein AGL24 MADS-box protein JOINTLESS MADS-box protein SVP-like MADS-box protein SVP-like MADS-box protein AGL24-like MADS-box protein SVP-like MADS-box protein AGL24-like MADS-box protein AGL24 MADS-box protein JOINTLESS-like MADS-box protein JOINTLESS MADS-box protein JOINTLESS MADS-box transcription factor 55-like MADS-box transcription factor 47-like MADS-box transcription factor 22-like MADS19 MADS-box transcription factor 55 MADS-box transcription factor 47 MADS-box transcription factor 55 MADS-box transcription factor 47 MADS-box transcription factor 22 MADS-box transcription factor 47-like MADS-box transcription factor 55-like MADS-box transcription factor 22-like MADS-box transcription factor 55 MADS-box transcription factor 22 MADS-box transcription factor 47-like MADS-box transcription factor 55 MADS-box transcription factor 22-like MADS-box transcription factor 55-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00730 Thiamine metabolism 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00071 Fatty acid degradation 3
bra00010 Glycolysis / Gluconeogenesis 2
bra00053 Ascorbate and aldarate metabolism 2
bra00280 Valine, leucine and isoleucine degradation 2
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 6
bra00380 Tryptophan metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00380 Tryptophan metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra01200 Carbon metabolism 3
bra04016 MAPK signaling pathway - plant 3
bra04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00561 Glycerolipid metabolism 2
ppo00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00910 Nitrogen metabolism 5
mtr01310 Nitrogen cycle 4
mtr01200 Carbon metabolism 2
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00910 Nitrogen metabolism 4
mtr01310 Nitrogen cycle 4
mtr01200 Carbon metabolism 2
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 5
ghi00710 Carbon fixation by Calvin cycle 4
ghi01230 Biosynthesis of amino acids 3
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi04075 Plant hormone signal transduction 4
ghi00220 Arginine biosynthesis 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 3
cit00941 Flavonoid biosynthesis 2
cit00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 3
cit00941 Flavonoid biosynthesis 2
cit00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa00230 Purine metabolism 2
osa00240 Pyrimidine metabolism 2
osa01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 3
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 6
osa00230 Purine metabolism 2
osa00240 Pyrimidine metabolism 2
osa01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101245905 101254194 102577849 102605771 107807098 107791218 107809739 816787 828556 100789126 100808695 103862215 103864363 103837880 100260900 100251508 7486551 7461823 7480191 11407049 11437402 11409914 107945005 107928622 107920922 106446430 106440793 106394683 102625387 102621460 102609601 4340495 4331872 4330805 542033 542035 542034 100137002 123098707 123145554 123449650 123411400 123402730 8080034 110434489 110431897 100821083 100839211 100821772
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