Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   GGPS   geranylgeranyl diphosphate synthase 
 sly-r.6   GGPS   geranylgeranyl diphosphate synthase 
 sot-r.1   102598437   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like 
 nta-r.1   107775163   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like 
 nta-r.1   107770520   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 ath-u.5   GGR   geranylgeranyl reductase 
 gma-u.5   100788186   geranylgeranyl pyrophosphate synthase-related protein, chloroplastic-like 
 bra-r.6   103850518   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 vvi-u.5   100855133   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 ppo-u.5   7474978   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 mtr-u.5   120577316   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 ghi-r.1   107920402   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 ghi-r.1   107922395   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 bna-r.1   106360195   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 bna-r.1   106438661   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 cit-r.1   102610722   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 osa-u.5   4330260   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 zma-u.5   100502542   putative geranylgeranyl pyrophosphate synthase 4 
 zma-u.5   103653897   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 tae-r.2   123145055   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 tae-r.2   123137670   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 tae-r.2   123127957   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 hvu-r.1   123401493   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 sbi-r.1   8076053   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 bdi-r.1   100834501   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 

close


Top 50 coexpressed genes to GGPS (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to GGPS (sly-u.5 coexpression data)

CoexMap"101246371"


slyGGPS | Entrez gene ID : 101246371      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 1 1 1 1 1 2 2 1 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00900 [list] [network] Terpenoid backbone biosynthesis (57 genes)
GO BP
GO:0008299 [list] [network] isoprenoid biosynthetic process  (124 genes)  IEA  
GO CC
GO MF
GO:0004659 [list] [network] prenyltransferase activity  (40 genes)  IEA  
Protein NP_001353635.1 [sequence] [blastp]
NP_001353636.1 [sequence] [blastp]
XP_010325943.1 [sequence] [blastp]
XP_069144772.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_001353635.1)
chlo 10  (predict for NP_001353636.1)
chlo 10  (predict for XP_010325943.1)
chlo 10  (predict for XP_069144772.1)
Subcellular
localization
TargetP
chlo 3  (predict for NP_001353635.1)
chlo 3  (predict for NP_001353636.1)
chlo 3  (predict for XP_010325943.1)
chlo 3  (predict for XP_069144772.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
GGPS
sly-r.6
for
GGPS
sot-r.1
for
102598437
nta-r.1
for
107775163
nta-r.1
for
107770520
ath-u.5
for
GGR
gma-u.5
for
100788186
bra-r.6
for
103850518
vvi-u.5
for
100855133
ppo-u.5
for
7474978
mtr-u.5
for
120577316
ghi-r.1
for
107920402
ghi-r.1
for
107922395
bna-r.1
for
106360195
bna-r.1
for
106438661
cit-r.1
for
102610722
osa-u.5
for
4330260
zma-u.5
for
100502542
zma-u.5
for
103653897
tae-r.2
for
123145055
tae-r.2
for
123137670
tae-r.2
for
123127957
hvu-r.1
for
123401493
sbi-r.1
for
8076053
bdi-r.1
for
100834501


Ortholog ID: 10265
Species sly sot nta nta ath gma bra vvi ppo mtr ghi ghi bna bna cit osa zma zma tae tae tae hvu sbi bdi
Symbol GGPS LOC102598437 LOC107775163 LOC107770520 GGR LOC100788186 LOC103850518 LOC100855133 LOC7474978 LOC120577316 LOC107920402 LOC107922395 LOC106360195 LOC106438661 LOC102610722 LOC4330260 LOC100502542 LOC103653897 LOC123145055 LOC123137670 LOC123127957 LOC123401493 LOC8076053 LOC100834501
Function* geranylgeranyl diphosphate synthase heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic geranylgeranyl reductase geranylgeranyl pyrophosphate synthase-related protein, chloroplastic-like heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic putative geranylgeranyl pyrophosphate synthase 4 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 7
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 7
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 3
ath00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 4
gma01240 Biosynthesis of cofactors 4
gma00270 Cysteine and methionine metabolism 3
gma00920 Sulfur metabolism 3
gma01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00190 Oxidative phosphorylation 2
ghi00195 Photosynthesis 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00190 Oxidative phosphorylation 2
ghi00195 Photosynthesis 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00660 C5-Branched dibasic acid metabolism 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00660 C5-Branched dibasic acid metabolism 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 4
bdi04145 Phagosome 4
bdi04142 Lysosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101246371 102598437 107775163 107770520 830002 100788186 103850518 100855133 7474978 120577316 107920402 107922395 106360195 106438661 102610722 4330260 100502542 103653897 123145055 123137670 123127957 123401493 8076053 100834501
The preparation time of this page was 0.1 [sec].