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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101247645   APO protein 1, chloroplastic 
 sly-r.6   101247645   APO protein 1, chloroplastic 
 sot-r.1   102604656   APO protein 1, chloroplastic-like 
 nta-r.1   107766123   APO protein 1, chloroplastic 
 nta-r.1   107824478   APO protein 1, chloroplastic-like 
 ath-u.5   APO1   APO RNA-binding protein (DUF794) 
 gma-u.5   100815655   APO protein 1, chloroplastic 
 gma-u.5   100790841   APO protein 1, chloroplastic 
 bra-r.6   103828686   APO protein 1, chloroplastic 
 ppo-u.5   18105980   APO protein 1, chloroplastic 
 mtr-u.5   11445495   APO protein 1, chloroplastic 
 ghi-r.1   107916587   APO protein 1, chloroplastic 
 ghi-r.1   107952853   APO protein 1, chloroplastic 
 bna-r.1   106450590   APO protein 1, chloroplastic 
 bna-r.1   111212757   APO protein 1, chloroplastic-like 
 cit-r.1   102626937   APO protein 1, chloroplastic 
 osa-u.5   4336989   APO protein 1, chloroplastic 
 zma-u.5   100383040   accumulation of photosystem one1 
 tae-r.2   123054278   APO protein 1, chloroplastic 
 tae-r.2   123046436   APO protein 1, chloroplastic 
 tae-r.2   123190175   APO protein 1, chloroplastic 
 sbi-r.1   110436524   APO protein 1, chloroplastic 
 bdi-r.1   100840691   APO protein 1, chloroplastic 

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Top 50 coexpressed genes to 101247645 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101247645 (sly-u.5 coexpression data)

CoexMap"101247645"


slyLOC101247645 | Entrez gene ID : 101247645      
Species sly sot nta ath gma bra ppo mtr ghi bna cit osa zma tae sbi bdi cre hvu vvi
Paralog 2 1 2 1 2 1 1 1 2 2 1 1 1 3 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
Protein XP_004245655.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_004245655.1)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for XP_004245655.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101247645
sly-r.6
for
101247645
sot-r.1
for
102604656
nta-r.1
for
107766123
nta-r.1
for
107824478
ath-u.5
for
APO1
gma-u.5
for
100815655
gma-u.5
for
100790841
bra-r.6
for
103828686
ppo-u.5
for
18105980
mtr-u.5
for
11445495
ghi-r.1
for
107916587
ghi-r.1
for
107952853
bna-r.1
for
106450590
bna-r.1
for
111212757
cit-r.1
for
102626937
osa-u.5
for
4336989
zma-u.5
for
100383040
tae-r.2
for
123054278
tae-r.2
for
123046436
tae-r.2
for
123190175
sbi-r.1
for
110436524
bdi-r.1
for
100840691


Ortholog ID: 11793
Species sly sot nta nta ath gma gma bra ppo mtr ghi ghi bna bna cit osa zma tae tae tae sbi bdi
Symbol LOC101247645 LOC102604656 LOC107766123 LOC107824478 APO1 LOC100815655 LOC100790841 LOC103828686 LOC18105980 LOC11445495 LOC107916587 LOC107952853 LOC106450590 LOC111212757 LOC102626937 LOC4336989 LOC100383040 LOC123054278 LOC123046436 LOC123190175 LOC110436524 LOC100840691
Function* APO protein 1, chloroplastic APO protein 1, chloroplastic-like APO protein 1, chloroplastic APO protein 1, chloroplastic-like APO RNA-binding protein (DUF794) APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic-like APO protein 1, chloroplastic APO protein 1, chloroplastic accumulation of photosystem one1 APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101247645 102604656 107766123 107824478 842789 100815655 100790841 103828686 18105980 11445495 107916587 107952853 106450590 111212757 102626937 4336989 100383040 123054278 123046436 123190175 110436524 100840691
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