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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101248584   eukaryotic translation initiation factor 3 subunit C 
 sly-r.6   101248584   eukaryotic translation initiation factor 3 subunit C 
 sly-u.5   101253539   eukaryotic translation initiation factor 3 subunit C-like 
 sly-u.5   101253839   eukaryotic translation initiation factor 3 subunit C-like 
 ath-u.5   EIF3C   eukaryotic translation initiation factor 3C 
 gma-u.5   100779751   eukaryotic translation initiation factor 3 subunit C 
 gma-u.5   100781967   eukaryotic translation initiation factor 3 subunit C 
 gma-u.5   100805203   eukaryotic translation initiation factor 3 subunit C 
 vvi-u.5   100252123   eukaryotic translation initiation factor 3 subunit C 
 ppo-u.5   7485618   eukaryotic translation initiation factor 3 subunit C 
 ppo-u.5   7488054   eukaryotic translation initiation factor 3 subunit C 
 ppo-u.5   7496901   eukaryotic translation initiation factor 3 subunit C 
 mtr-u.5   11432846   eukaryotic translation initiation factor 3 subunit C-like 
 mtr-u.5   11419223   eukaryotic translation initiation factor 3 subunit C 
 mtr-u.5   11428517   eukaryotic translation initiation factor 3 subunit C-like 
 osa-u.5   4342306   eukaryotic translation initiation factor 3 subunit C 
 osa-u.5   4328137   eukaryotic translation initiation factor 3 subunit C 
 zma-u.5   103632933   eukaryotic translation initiation factor 3 subunit C 
 zma-u.5   100502419   uncharacterized LOC100502419 
 zma-u.5   100272475   Eukaryotic translation initiation factor 3 subunit C 

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Top 50 coexpressed genes to 101248584 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101248584 (sly-u.5 coexpression data)

CoexMap"101248584"


slyLOC101248584 | Entrez gene ID : 101248584      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 1 3 1 3 3 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006413 [list] [network] translational initiation  (54 genes)  IEA  
GO CC
GO:0005852 [list] [network] eukaryotic translation initiation factor 3 complex  (19 genes)  IEA  
GO MF
GO:0031369 [list] [network] translation initiation factor binding  (15 genes)  IEA  
GO:0003743 [list] [network] translation initiation factor activity  (64 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
Protein XP_004241227.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  nucl 1  (predict for XP_004241227.1)
Subcellular
localization
TargetP
other 9  (predict for XP_004241227.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101248584

.
sly-r.6
for
101248584

.
sly-u.5
for
101253539

.
sly-u.5
for
101253839

.
ath-u.5
for
EIF3C

.
gma-u.5
for
100779751

.
gma-u.5
for
100781967

.
gma-u.5
for
100805203

.
vvi-u.5
for
100252123

.
ppo-u.5
for
7485618

.
ppo-u.5
for
7488054

.
ppo-u.5
for
7496901

.
mtr-u.5
for
11432846

.
mtr-u.5
for
11419223

.
mtr-u.5
for
11428517

.
osa-u.5
for
4342306

.
osa-u.5
for
4328137

.
zma-u.5
for
103632933

.
zma-u.5
for
100502419

.
zma-u.5
for
100272475

.


Ortholog ID: 3109
Species ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol EIF3C LOC100805203 LOC100781967 LOC101248584 LOC101253539 LOC4342306 LOC4328137 LOC103632933 LOC100272475 LOC103852186 LOC103841725 LOC100252123 LOC7488054 LOC7485618 LOC11419223 LOC11432846 LOC123122973 LOC123103816 LOC123452427 LOC123397910 LOC107891224 LOC107891225 LOC106405676 LOC106432305 CHLRE_04g217550v5 LOC8077865 LOC8055872 LOC102595694 LOC102595553 LOC102623750 LOC100832515 LOC100820956 LOC107777604 LOC107822476
Function* eukaryotic translation initiation factor 3C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C-like eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C Eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C-like eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C-like eukaryotic translation initiation factor 3 subunit C-like eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C uncharacterized protein eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C-like eukaryotic translation initiation factor 3 subunit C-like eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C eukaryotic translation initiation factor 3 subunit C-like eukaryotic translation initiation factor 3 subunit C
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 4
ath03040 Spliceosome 2
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 4
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00750 Vitamin B6 metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 3
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 3
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 5
sot03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 5
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
cit03040 Spliceosome 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824781 100805203 100781967 101248584 101253539 4342306 4328137 103632933 100272475 103852186 103841725 100252123 7488054 7485618 11419223 11432846 123122973 123103816 123452427 123397910 107891224 107891225 106405676 106432305 5728655 8077865 8055872 102595694 102595553 102623750 100832515 100820956 107777604 107822476
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