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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101250331   large ribosomal subunit protein uL5c 
 sly-r.6   101250331   large ribosomal subunit protein uL5c 
 sly-m.5   101250331   large ribosomal subunit protein uL5c 
 ath-u.5   AT4G01310   Ribosomal L5P family protein 
 gma-u.5   100818896   50S ribosomal protein L5, chloroplastic-like 
 gma-u.5   100800193   50S ribosomal protein L5, chloroplastic 
 vvi-u.5   100251632   large ribosomal subunit protein uL5c 
 ppo-u.5   7494109   50S ribosomal protein L5, chloroplastic 
 ppo-u.5   7494045   50S ribosomal protein L5, chloroplastic 
 mtr-u.5   11405167   50S ribosomal protein L5, chloroplastic 
 osa-u.5   4331459   50S ribosomal protein L5, chloroplastic-like 
 zma-u.5   100281329   50S ribosomal protein L5 

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Top 50 coexpressed genes to 101250331 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101250331 (sly-u.5 coexpression data)

CoexMap"101250331"


slyLOC101250331 | Entrez gene ID : 101250331      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 2 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03010 [list] [network] Ribosome (6225 genes)
GO BP
GO:0006412 [list] [network] translation  (492 genes)  IEA  
GO CC
GO:0005840 [list] [network] ribosome  (354 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (342 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
Protein XP_004246669.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_004246669.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_004246669.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101250331

.
sly-r.6
for
101250331

.
sly-m.5
for
101250331

.
ath-u.5
for
AT4G01310

.
gma-u.5
for
100818896

.
gma-u.5
for
100800193

.
vvi-u.5
for
100251632

.
ppo-u.5
for
7494109

.
ppo-u.5
for
7494045

.
mtr-u.5
for
11405167

.
osa-u.5
for
4331459

.
zma-u.5
for
100281329

.


Ortholog ID: 7662
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit cit bdi nta nta
Symbol AT4G01310 LOC100800193 LOC100818896 LOC101250331 LOC4331459 LOC100281329 LOC103858847 LOC103836890 LOC100251632 LOC7494045 LOC7494109 LOC11405167 LOC123098990 LOC123105926 LOC123449866 LOC107955268 LOC107954523 LOC106365545 LOC106365657 LOC110431438 LOC102591299 LOC127901503 LOC102619460 LOC100837519 LOC107828527 LOC107761040
Function* Ribosomal L5P family protein 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic-like large ribosomal subunit protein uL5c 50S ribosomal protein L5, chloroplastic-like 50S ribosomal protein L5 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic large ribosomal subunit protein uL5c 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic-like 50S ribosomal protein L5, chloroplastic 50S ribosomal protein L5, chloroplastic large ribosomal subunit protein uL5c-like large ribosomal subunit protein uL5c
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 10
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 16
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae00030 Pentose phosphate pathway 3
tae00230 Purine metabolism 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 12
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
hvu00860 Porphyrin metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 15
ghi00860 Porphyrin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 12
sbi00860 Porphyrin metabolism 4
sbi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 11
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 9
nta00750 Vitamin B6 metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827947 100800193 100818896 101250331 4331459 100281329 103858847 103836890 100251632 7494045 7494109 11405167 123098990 123105926 123449866 107955268 107954523 106365545 106365657 110431438 102591299 127901503 102619460 100837519 107828527 107761040
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