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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101250904   cyclin-T1-3 
 sly-r.6   101250904   cyclin-T1-3 
 sly-m.5   101250904   cyclin-T1-3 
 sly-u.5   101260979   cyclin-T1-3 
 ath-u.5   CYCT1;2   Cyclin family protein 
 ath-u.5   CYCT1;4   Cyclin family protein 
 ath-u.5   AT5G45190   Cyclin family protein 
 gma-u.5   100808446   cyclin-T1-5 
 gma-u.5   100802312   cyclin-T1-3 
 gma-u.5   100791516   cyclin-T1-3 
 vvi-u.5   100266147   cyclin-T1-3 
 vvi-u.5   100265067   cyclin-T1-5 
 vvi-u.5   100256429   cyclin-T1-3 
 ppo-u.5   7456334   cyclin-T1-3 
 ppo-u.5   7464855   cyclin-T1-5 
 ppo-u.5   7479725   cyclin-T1-3 
 mtr-u.5   11416403   cyclin-T1-5 
 mtr-u.5   11444662   cyclin-T1-3 
 osa-u.5   4352229   cyclin-T1-4-like 
 osa-u.5   4328207   cyclin-T1-1 
 zma-u.5   100384646   uncharacterized LOC100384646 
 zma-u.5   118472322   cyclin-T1-3-like 
 zma-u.5   103654263   protein trichome birefringence-like 28 

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Top 50 coexpressed genes to 101250904 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101250904 (sly-u.5 coexpression data)

CoexMap"101250904"


slyLOC101250904 | Entrez gene ID : 101250904      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 3 3 3 3 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03250 [list] [network] Viral life cycle - HIV-1 (38 genes)
GO BP
GO:0032786 [list] [network] positive regulation of DNA-templated transcription, elongation  (23 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (493 genes)  IEA  
GO CC
GO:0008024 [list] [network] cyclin/CDK positive transcription elongation factor complex  (3 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0061575 [list] [network] cyclin-dependent protein serine/threonine kinase activator activity  (4 genes)  IEA  
Protein XP_010323565.1 [sequence] [blastp]
XP_010323567.1 [sequence] [blastp]
XP_069142943.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto 1,  mito 1,  cysk 1,  golg_plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_010323565.1)
nucl 4,  chlo 3,  cyto 1,  mito 1,  cysk 1,  golg_plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_010323567.1)
nucl 4,  chlo 3,  cyto 1,  mito 1,  cysk 1,  golg_plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_069142943.1)
Subcellular
localization
TargetP
other 8  (predict for XP_010323565.1)
other 8  (predict for XP_010323567.1)
other 8  (predict for XP_069142943.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101250904

.
sly-r.6
for
101250904

.
sly-m.5
for
101250904

.
sly-u.5
for
101260979

.
ath-u.5
for
CYCT1;2

.
ath-u.5
for
CYCT1;4

.
ath-u.5
for
AT5G45190

.
gma-u.5
for
100808446

.
gma-u.5
for
100802312

.
gma-u.5
for
100791516

.
vvi-u.5
for
100266147

.
vvi-u.5
for
100265067

.
vvi-u.5
for
100256429

.
ppo-u.5
for
7456334

.
ppo-u.5
for
7464855

.
ppo-u.5
for
7479725

.
mtr-u.5
for
11416403

.
mtr-u.5
for
11444662

.
osa-u.5
for
4352229

.
osa-u.5
for
4328207

.
zma-u.5
for
100384646

.
zma-u.5
for
118472322

.
zma-u.5
for
103654263

.


Ortholog ID: 936
Species ath ath gma gma sly sly osa osa zma zma bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol CYCT1;2 CYCT1;4 LOC100802312 LOC100803349 LOC101250904 LOC101260979 LOC4328207 LOC4349827 LOC103630860 LOC103626584 LOC103834124 LOC100265067 LOC100266147 LOC7492107 LOC7497532 LOC11416403 LOC123091478 LOC123091481 LOC123399216 LOC123427030 LOC107891752 LOC121203542 LOC106425346 CHLRE_14g613900v5 LOC8064072 LOC8070784 LOC102600355 LOC102605502 LOC102620815 LOC102615961 LOC100845488 LOC100829376 LOC107764485 LOC107766618
Function* Cyclin family protein Cyclin family protein cyclin-T1-3 cyclin-T1-3 cyclin-T1-3 cyclin-T1-3 cyclin-T1-1 cyclin-T1-3-like cyclin-T1-3 cyclin-T1-1 cyclin-T1-4 cyclin-T1-5 cyclin-T1-3 cyclin-T1-3 cyclin-T1-4 cyclin-T1-5 cyclin-T1-3 cyclin-T1-3 cyclin-T1-4-like cyclin-T1-3-like cyclin-T1-5 cyclin-T1-4 cyclin-T1-3 uncharacterized protein cyclin-T1-4 cyclin-T1-3 cyclin-T1-3-like cyclin-T1-4-like cyclin-T1-3-like cyclin-T1-5 cyclin-T1-4 cyclin-T1-3 cyclin-T1-3-like cyclin-T1-3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03250 Viral life cycle - HIV-1 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 3
zma00561 Glycerolipid metabolism 2
zma00564 Glycerophospholipid metabolism 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03083 Polycomb repressive complex 3
tae04712 Circadian rhythm - plant 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 4
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta03250 Viral life cycle - HIV-1 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827698 827702 100802312 100803349 101250904 101260979 4328207 4349827 103630860 103626584 103834124 100265067 100266147 7492107 7497532 11416403 123091478 123091481 123399216 123427030 107891752 121203542 106425346 5724594 8064072 8070784 102600355 102605502 102620815 102615961 100845488 100829376 107764485 107766618
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