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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101252484   THO complex subunit 5A 
 sly-r.6   101252484   THO complex subunit 5A 
 ath-u.5   THO5   THO complex, subunit 5 
 ath-u.5   THO5   THO complex, subunit 5 
 gma-u.5   100816115   THO complex subunit 5A 
 gma-u.5   100813001   THO complex subunit 5B 
 gma-u.5   100781588   THO complex subunit 5B 
 vvi-u.5   100242063   THO complex subunit 5B 
 ppo-u.5   7464925   THO complex subunit 5B 
 mtr-u.5   11433389   THO complex subunit 5A 
 osa-u.5   4330841   THO complex subunit 5A 
 zma-u.5   100191475   THO complex subunit 5B 

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Top 50 coexpressed genes to 101252484 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101252484 (sly-u.5 coexpression data)

CoexMap"101252484"


slyLOC101252484 | Entrez gene ID : 101252484    
Species sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 2 2 3 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03013 [list] [network] Nucleocytoplasmic transport (106 genes)
sly03040 [list] [network] Spliceosome (385 genes)
GO BP
GO:0032786 [list] [network] positive regulation of DNA-templated transcription, elongation  (23 genes)  IEA  
GO:0006406 [list] [network] mRNA export from nucleus  (32 genes)  IEA  
GO CC
GO:0000445 [list] [network] THO complex part of transcription export complex  (6 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (315 genes)  IEA  
Protein XP_004238149.2 [sequence] [blastp]
XP_069153529.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_004238149.2)
nucl 7,  cyto 1,  chlo 1,  mito 1,  chlo_mito 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_069153529.1)
Subcellular
localization
TargetP
other 9  (predict for XP_004238149.2)
other 8  (predict for XP_069153529.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101252484
sly-r.6
for
101252484
ath-u.5
for
THO5
ath-u.5
for
THO5
gma-u.5
for
100816115
gma-u.5
for
100813001
gma-u.5
for
100781588
vvi-u.5
for
100242063
ppo-u.5
for
7464925
mtr-u.5
for
11433389
osa-u.5
for
4330841
zma-u.5
for
100191475


Ortholog ID: 7363
Species sly sot nta nta ath ath gma gma bra bra vvi ppo mtr ghi ghi bna bna cit osa zma tae tae hvu sbi bdi cre
Symbol LOC101252484 LOC102594687 LOC107824388 LOC107794354 THO5 THO5 LOC100781588 LOC100775509 LOC103828006 LOC103848368 LOC100242063 LOC7464925 LOC11433389 LOC107905576 LOC107958125 LOC106422578 LOC106349537 LOC102609464 LOC4330841 LOC100191475 LOC123128578 LOC123138448 LOC123404583 LOC8078925 LOC100832556 CHLRE_17g705550v5
Function* THO complex subunit 5A THO complex subunit 5A THO complex subunit 5B THO complex subunit 5B THO complex, subunit 5 THO complex, subunit 5 THO complex subunit 5B THO complex subunit 5A THO complex subunit 5B THO complex subunit 5A THO complex subunit 5B THO complex subunit 5B THO complex subunit 5A THO complex subunit 5B THO complex subunit 5B THO complex subunit 5A THO complex subunit 5B THO complex subunit 5A-like THO complex subunit 5A THO complex subunit 5B THO complex subunit 5A THO complex subunit 5A THO complex subunit 5A THO complex subunit 5A THO complex subunit 5B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00020 Citrate cycle (TCA cycle) 4
sly01200 Carbon metabolism 4
sly00640 Propanoate metabolism 3
sly01210 2-Oxocarboxylic acid metabolism 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 5
mtr03082 ATP-dependent chromatin remodeling 2
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03040 Spliceosome 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu04120 Ubiquitin mediated proteolysis 2
hvu04141 Protein processing in endoplasmic reticulum 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 7
sbi00510 N-Glycan biosynthesis 6
sbi00513 Various types of N-glycan biosynthesis 6
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03013 Nucleocytoplasmic transport 2
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101252484 102594687 107824388 107794354 834304 841093 100781588 100775509 103828006 103848368 100242063 7464925 11433389 107905576 107958125 106422578 106349537 102609464 4330841 100191475 123128578 123138448 123404583 8078925 100832556 5717216
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