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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101254698   serine/threonine-protein phosphatase PP1 isozyme 3 
 sly-r.6   101254698   serine/threonine-protein phosphatase PP1 isozyme 3 
 sly-u.5   101258308   serine/threonine-protein phosphatase PP1 
 sly-u.5   101251329   serine/threonine-protein phosphatase PP1 
 sly-u.5   101249363   serine/threonine-protein phosphatase PP1 
 ath-u.5   TOPP6   type one serine/threonine protein phosphatase 6 
 ath-u.5   TOPP3   type one serine/threonine protein phosphatase 3 
 ath-u.5   TOPP2   type one serine/threonine protein phosphatase 2 
 gma-u.5   100807069   serine/threonine-protein phosphatase PP1 isozyme 4-like 
 gma-u.5   100808597   serine/threonine-protein phosphatase PP1 
 gma-u.5   100811593   serine/threonine-protein phosphatase PP1 isozyme 4-like 
 vvi-u.5   100250219   serine/threonine-protein phosphatase PP1 
 vvi-u.5   100259840   serine/threonine-protein phosphatase PP1 isozyme 4 
 ppo-u.5   7482623   uncharacterized LOC7482623 
 ppo-u.5   7487983   serine/threonine-protein phosphatase PP1 isozyme 4 
 mtr-u.5   11431740   serine/threonine-protein phosphatase PP1 
 mtr-u.5   25502117   serine/threonine-protein phosphatase PP1 
 mtr-u.5   11432243   serine/threonine-protein phosphatase PP1 
 osa-u.5   4340228   serine/threonine-protein phosphatase PP1 
 osa-u.5   4326473   serine/threonine-protein phosphatase PP1 
 zma-u.5   100272981   Serine/threonine-protein phosphatase PP1 isozyme 2 
 zma-u.5   100217163   uncharacterized LOC100217163 
 zma-u.5   100216757   putative serine/threonine protein phosphatase superfamily protein 

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Top 50 coexpressed genes to 101254698 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101254698 (sly-u.5 coexpression data)

CoexMap"101254698"


slyLOC101254698 | Entrez gene ID : 101254698      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 5 3 3 2 2 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03015 [list] [network] mRNA surveillance pathway (129 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0004722 [list] [network] protein serine/threonine phosphatase activity  (118 genes)  IEA  
Protein XP_004240775.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 1,  plas 1,  cysk 1,  golg 1,  cysk_nucl 1,  nucl_plas 1,  golg_plas 1,  cysk_plas 1  (predict for XP_004240775.1)
Subcellular
localization
TargetP
other 8  (predict for XP_004240775.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101254698

.
sly-r.6
for
101254698

.
sly-u.5
for
101258308

.
sly-u.5
for
101251329

.
sly-u.5
for
101249363

.
ath-u.5
for
TOPP6

.
ath-u.5
for
TOPP3

.
ath-u.5
for
TOPP2

.
gma-u.5
for
100807069

.
gma-u.5
for
100808597

.
gma-u.5
for
100811593

.
vvi-u.5
for
100250219

.
vvi-u.5
for
100259840

.
ppo-u.5
for
7482623

.
ppo-u.5
for
7487983

.
mtr-u.5
for
11431740

.
mtr-u.5
for
25502117

.
mtr-u.5
for
11432243

.
osa-u.5
for
4340228

.
osa-u.5
for
4326473

.
zma-u.5
for
100272981

.
zma-u.5
for
100217163

.
zma-u.5
for
100216757

.


Ortholog ID: 188
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit cit bdi bdi nta nta
Symbol TOPP9 TOPP5 LOC100780047 LOC100811593 LOC101251329 LOC101260053 LOC4340228 LOC4326473 LOC103635487 LOC542269 LOC103827974 LOC103856650 LOC100259840 LOC100258649 LOC7458113 LOC7468609 LOC11432243 LOC11431740 LOC123180557 LOC123068691 LOC123399686 LOC107952129 LOC107906581 LOC106388742 LOC106366228 CHLRE_06g292550v5 LOC8075330 LOC102602508 LOC102590224 LOC102612516 LOC102610810 LOC100841528 LOC100829796 LOC107828780 LOC107801901
Function* Calcineurin-like metallo-phosphoesterase superfamily protein type one serine/threonine protein phosphatase 5 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 4-like serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 ser/thr protein phosphatase 1 serine/threonine-protein phosphatase PP1 isozyme 7 serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 4 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 4 serine/threonine-protein phosphatase PP1 isozyme 1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase alpha-3 isoform serine/threonine-protein phosphatase PP1-like serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 6-like uncharacterized protein serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1-like serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 4 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 5
ath04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly03013 Nucleocytoplasmic transport 3
sly03040 Spliceosome 3
sly03008 Ribosome biogenesis in eukaryotes 2
sly03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03015 mRNA surveillance pathway 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
zma03015 mRNA surveillance pathway 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
zma04120 Ubiquitin mediated proteolysis 2
zma04141 Protein processing in endoplasmic reticulum 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi04120 Ubiquitin mediated proteolysis 3
vvi04382 Cornified envelope formation 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo03040 Spliceosome 3
ppo03015 mRNA surveillance pathway 2
ppo03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00561 Glycerolipid metabolism 2
ppo00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 10
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna03015 mRNA surveillance pathway 4
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03015 mRNA surveillance pathway 4
cre04382 Cornified envelope formation 3
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 6
nta04016 MAPK signaling pathway - plant 4
nta04075 Plant hormone signal transduction 4
nta04136 Autophagy - other 2
nta04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819724 823835 100780047 100811593 101251329 101260053 4340228 4326473 103635487 542269 103827974 103856650 100259840 100258649 7458113 7468609 11432243 11431740 123180557 123068691 123399686 107952129 107906581 106388742 106366228 5727122 8075330 102602508 102590224 102612516 102610810 100841528 100829796 107828780 107801901
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