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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5  101254733  pentatricopeptide repeat-containing protein At4g37170 
 sly-r.6  101254733  pentatricopeptide repeat-containing protein At4g37170 
 ath-u.5  AT4G37170  Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5  100782448  pentatricopeptide repeat-containing protein At4g37170 
 vvi-u.5  100251274  pentatricopeptide repeat-containing protein At4g37170 
 mtr-u.5  11427460  pentatricopeptide repeat-containing protein At4g37170 
 zma-u.5  100273856  Pentatricopeptide repeat-containing protein 

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Top 50 coexpressed genes to 101254733 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101254733 (sly-u.5 coexpression data)

CoexMap"101254733"


slyLOC101254733 | Entrez gene ID : 101254733
Species sly ath gma vvi mtr zma sbi nta bra osa cre cit hvu ppo bdi sot tae bna ghi
Paralog 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (280 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1242 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004229908.2 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 4  (predict for XP_004229908.2)
Subcellular
localization
TargetP
mito 5,  chlo 3  (predict for XP_004229908.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

sly-u.5
for
101254733

.

sly-r.6
for
101254733

.

ath-u.5
for
AT4G37170

.

gma-u.5
for
100782448

.

vvi-u.5
for
100251274

.

mtr-u.5
for
11427460

.

zma-u.5
for
100273856

.


Ortholog ID: 11386
Species ath gma sly zma bra vvi mtr ghi ghi bna bna sot cit bdi nta nta
Symbol AT4G37170 LOC100782448 LOC101254733 LOC100273856 LOC103864449 LOC100251274 LOC11427460 LOC107945306 LOC107933175 LOC106441267 LOC125608185 LOC102586998 LOC102611243 LOC100829162 LOC107762515 LOC107826338
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At4g37170 pentatricopeptide repeat-containing protein At4g37170 Pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g37170 pentatricopeptide repeat-containing protein At4g37170 pentatricopeptide repeat-containing protein At4g37170 pentatricopeptide repeat-containing protein At4g37170 pentatricopeptide repeat-containing protein At4g37170 pentatricopeptide repeat-containing protein At4g37170-like pentatricopeptide repeat-containing protein At4g37170-like pentatricopeptide repeat-containing protein At4g37170-like pentatricopeptide repeat-containing protein At4g37170 pentatricopeptide repeat-containing protein At4g37170 pentatricopeptide repeat-containing protein At4g37170-like pentatricopeptide repeat-containing protein At4g37170-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00760 Nicotinate and nicotinamide metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829871 100782448 101254733 100273856 103864449 100251274 11427460 107945306 107933175 106441267 125608185 102586998 102611243 100829162 107762515 107826338
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