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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101255489   protein YELLOW LEAF 1, choloroplastic 
 sly-r.6   101255489   protein YELLOW LEAF 1, choloroplastic 
 sly-u.5   101257880   protein YELLOW LEAF 1, choloroplastic-like 
 ath-u.5   EMB1303   embryo defective 1303 
 gma-u.5   100817121   protein YELLOW LEAF 1, choloroplastic 
 gma-u.5   100306022   uncharacterized LOC100306022 
 vvi-u.5   100244627   protein FERTILITY RESTORER RF2, mitochondrial 
 ppo-u.5   18103522   protein YELLOW LEAF 1, choloroplastic 
 ppo-u.5   7487562   protein YELLOW LEAF 1, choloroplastic 
 mtr-u.5   25490736   protein FERTILITY RESTORER RF2, mitochondrial 

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Top 50 coexpressed genes to 101255489 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101255489 (sly-u.5 coexpression data)

CoexMap"101255489"


slyLOC101255489 | Entrez gene ID : 101255489    
Species sly ath gma vvi ppo mtr hvu osa sot tae nta bra cit ghi zma bna bdi sbi cre
Paralog 3 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010027 [list] [network] thylakoid membrane organization  (11 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (67 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (632 genes)  IEA  
GO MF
Protein XP_004237459.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_004237459.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_004237459.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101255489

.
sly-r.6
for
101255489

.
sly-u.5
for
101257880

.
ath-u.5
for
EMB1303

.
gma-u.5
for
100817121

.
gma-u.5
for
100306022

.
vvi-u.5
for
100244627

.
ppo-u.5
for
18103522

.
ppo-u.5
for
7487562

.
mtr-u.5
for
25490736

.


Ortholog ID: 6734
Species ath gma gma sly sly bra bra vvi ppo ppo mtr ghi bna bna sot sot cit cit nta nta
Symbol EMB1303 LOC100306022 LOC100817121 LOC101255489 LOC101257880 LOC103828805 LOC103835209 LOC100244627 LOC7487562 LOC18103522 LOC25490736 LOC107947452 BNAC03G59750D LOC106436400 LOC102600615 LOC102588854 LOC102614333 LOC102623881 LOC107804991 LOC107820657
Function* embryo defective 1303 uncharacterized LOC100306022 protein YELLOW LEAF 1, choloroplastic protein YELLOW LEAF 1, choloroplastic protein YELLOW LEAF 1, choloroplastic-like protein YELLOW LEAF 1, choloroplastic protein YELLOW LEAF 1, choloroplastic protein FERTILITY RESTORER RF2, mitochondrial protein YELLOW LEAF 1, choloroplastic protein YELLOW LEAF 1, choloroplastic protein FERTILITY RESTORER RF2, mitochondrial uncharacterized LOC107947452 protein YELLOW LEAF 1, choloroplastic protein YELLOW LEAF 1, choloroplastic uncharacterized LOC102600615 uncharacterized LOC102588854 hypothetical protein protein FERTILITY RESTORER RF2, mitochondrial-like uncharacterized LOC107804991 uncharacterized LOC107820657
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 3
ath03083 Polycomb repressive complex 2
ath04120 Ubiquitin mediated proteolysis 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
ppo00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 4
bna04120 Ubiquitin mediated proteolysis 4
bna04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot03060 Protein export 2
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 8
cit03040 Spliceosome 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842073 100306022 100817121 101255489 101257880 103828805 103835209 100244627 7487562 18103522 25490736 107947452 106439711 106436400 102600615 102588854 102614333 102623881 107804991 107820657
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