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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   AGO4A   argonaute 4A 
 sly-r.6   AGO4A   argonaute 4A 
 sly-u.5   AGO4D   Argonaute 4D 
 sly-u.5   AGO6   Argonaute 6 
 sot-r.1   102583338   protein argonaute 16-like 
 sot-r.1   102604021   protein argonaute 4 
 nta-r.1   107830831   protein argonaute 4-like 
 nta-r.1   107830624   protein argonaute 16 
 ath-u.5   AGO4   Argonaute family protein 
 ath-u.5   AGO6   Argonaute family protein 
 gma-u.5   100778875   protein argonaute 6 
 gma-u.5   100792105   protein argonaute 4 
 bra-r.6   103851403   protein argonaute 9 
 bra-r.6   103857461   protein argonaute 6 
 vvi-u.5   100243183   protein argonaute 16 
 vvi-u.5   100241029   protein argonaute 4 
 ppo-u.5   7479625   protein argonaute 4A 
 ppo-u.5   7455965   protein argonaute 16 
 mtr-u.5   11433384   protein argonaute 4 
 mtr-u.5   11433386   protein argonaute 4 
 ghi-r.1   107962789   protein argonaute 4 
 ghi-r.1   107959046   protein argonaute 4 
 ghi-r.1   107955633   protein argonaute 16 
 bna-r.1   106437777   protein argonaute 6 
 bna-r.1   106446773   protein argonaute 4 
 bna-r.1   106445443   protein argonaute 4 
 cit-r.1   102610347   protein argonaute 16 
 cit-r.1   102615576   protein argonaute 4B-like 
 cit-r.1   102622330   protein argonaute 4-like 
 osa-u.5   4324438   protein argonaute 4A-like 
 osa-u.5   4335025   protein argonaute 4B-like 
 osa-u.5   4342886   protein argonaute 16-like 
 zma-u.5   100383316   argonaute104 
 zma-u.5   100382704   uncharacterized LOC100382704 
 zma-u.5   100217027   uncharacterized LOC100217027 
 tae-r.2   123183434   protein argonaute 4B 
 tae-r.2   123150147   protein argonaute 4B 
 hvu-r.1   123452899   protein argonaute 4B-like 
 hvu-r.1   123443511   protein argonaute 4A 
 sbi-r.1   8066572   protein argonaute 4B 
 sbi-r.1   8061215   protein argonaute 16 
 bdi-r.1   100828729   protein argonaute 16 
 bdi-r.1   100835941   protein argonaute 4B 
 bdi-r.1   100845074   protein argonaute 4A 

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Top 50 coexpressed genes to AGO4A (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AGO4A (sly-u.5 coexpression data)

CoexMap"101256023"


slyAGO4A | Entrez gene ID : 101256023      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 4 2 2 2 2 2 2 2 2 3 3 3 3 3 2 2 2 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0035194 [list] [network] regulatory ncRNA-mediated post-transcriptional gene silencing  (17 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0004521 [list] [network] RNA endonuclease activity  (253 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein NP_001266156.1 [sequence] [blastp]
XP_069152909.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 2,  chlo 1,  cysk 1  (predict for NP_001266156.1)
nucl 6,  cyto 2,  chlo 1,  cysk 1  (predict for XP_069152909.1)
Subcellular
localization
TargetP
other 9,  chlo 3  (predict for NP_001266156.1)
other 9,  chlo 3  (predict for XP_069152909.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
AGO4A
sly-r.6
for
AGO4A
sly-u.5
for
AGO4D
sly-u.5
for
AGO6
sot-r.1
for
102583338
sot-r.1
for
102604021
nta-r.1
for
107830831
nta-r.1
for
107830624
ath-u.5
for
AGO4
ath-u.5
for
AGO6
gma-u.5
for
100778875
gma-u.5
for
100792105
bra-r.6
for
103851403
bra-r.6
for
103857461
vvi-u.5
for
100243183
vvi-u.5
for
100241029
ppo-u.5
for
7479625
ppo-u.5
for
7455965
mtr-u.5
for
11433384
mtr-u.5
for
11433386
ghi-r.1
for
107962789
ghi-r.1
for
107959046
ghi-r.1
for
107955633
bna-r.1
for
106437777
bna-r.1
for
106446773
bna-r.1
for
106445443
cit-r.1
for
102610347
cit-r.1
for
102615576
cit-r.1
for
102622330
osa-u.5
for
4324438
osa-u.5
for
4335025
osa-u.5
for
4342886
zma-u.5
for
100383316
zma-u.5
for
100382704
zma-u.5
for
100217027
tae-r.2
for
123183434
tae-r.2
for
123150147
hvu-r.1
for
123452899
hvu-r.1
for
123443511
sbi-r.1
for
8066572
sbi-r.1
for
8061215
bdi-r.1
for
100828729
bdi-r.1
for
100835941
bdi-r.1
for
100845074


Ortholog ID: 1140
Species sly sly sot nta nta ath ath gma gma gma bra bra bra vvi vvi ppo ppo ppo mtr mtr ghi ghi ghi bna bna bna cit cit cit osa osa osa zma zma tae tae hvu hvu hvu sbi sbi bdi bdi bdi
Symbol AGO4A AGO4D LOC102583338 LOC107830831 LOC107784197 AGO4 AGO6 LOC100778875 LOC100792105 LOC100820376 LOC103851403 LOC103857461 LOC103829646 LOC100241029 LOC100260151 LOC7479625 LOC18094926 LOC7453743 LOC11433384 LOC11439465 LOC107959046 LOC107943176 LOC107906203 LOC106425688 LOC106388008 LOC106370426 LOC102610347 LOC102615576 LOC102622330 LOC4324438 LOC4335025 LOC4342886 LOC100383316 LOC100217027 LOC123183434 LOC123150147 LOC123452899 LOC123443511 LOC123395895 LOC8066572 LOC8061215 LOC100828729 LOC100835941 LOC100845074
Function* argonaute 4A Argonaute 4D protein argonaute 16-like protein argonaute 4-like protein argonaute 4-like Argonaute family protein Argonaute family protein protein argonaute 6 protein argonaute 4 protein argonaute 4 protein argonaute 9 protein argonaute 6 protein argonaute 4 protein argonaute 4 protein argonaute 4A protein argonaute 4A protein argonaute 4 protein argonaute 4A protein argonaute 4 protein argonaute 16 protein argonaute 4 protein argonaute 4 protein argonaute 4 protein argonaute 9 protein argonaute 6 protein argonaute 9-like protein argonaute 16 protein argonaute 4B-like protein argonaute 4-like protein argonaute 4A-like protein argonaute 4B-like protein argonaute 16-like argonaute104 uncharacterized LOC100217027 protein argonaute 4B protein argonaute 4B protein argonaute 4B-like protein argonaute 4A protein argonaute 16-like protein argonaute 4B protein argonaute 16 protein argonaute 16 protein argonaute 4B protein argonaute 4A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00052 Galactose metabolism 2
sly00500 Starch and sucrose metabolism 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
ath03460 Fanconi anemia pathway 2
ath03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 5
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 9
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03460 Fanconi anemia pathway 3
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 3
mtr03020 RNA polymerase 2
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
mtr03440 Homologous recombination 2
mtr03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
ghi00220 Arginine biosynthesis 2
ghi00230 Purine metabolism 2
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 2
cit03410 Base excision repair 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 3
osa03082 ATP-dependent chromatin remodeling 2
osa03015 mRNA surveillance pathway 2
osa03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03082 ATP-dependent chromatin remodeling 2
osa03040 Spliceosome 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 5
hvu03030 DNA replication 2
hvu03410 Base excision repair 2
hvu03420 Nucleotide excision repair 2
hvu03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
sbi03430 Mismatch repair 2
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 2
bdi00061 Fatty acid biosynthesis 2
bdi00062 Fatty acid elongation 2
bdi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03015 mRNA surveillance pathway 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101256023 101248049 102583338 107830831 107784197 817246 817856 100778875 100792105 100820376 103851403 103857461 103829646 100241029 100260151 7479625 18094926 7453743 11433384 11439465 107959046 107943176 107906203 106425688 106388008 106370426 102610347 102615576 102622330 4324438 4335025 4342886 100383316 100217027 123183434 123150147 123452899 123443511 123395895 8066572 8061215 100828729 100835941 100845074
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