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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101256637   DNA polymerase delta catalytic subunit 
 sly-r.6   101256637   DNA polymerase delta catalytic subunit 
 sot-r.1   102604894   DNA polymerase delta catalytic subunit 
 nta-r.1   107812440   DNA polymerase delta catalytic subunit 
 nta-r.1   107781169   DNA polymerase delta catalytic subunit 
 ath-u.5   AT5G63960   DNA polymerase delta subunit 1 
 gma-u.5   POLD1   DNA polymerase delta 
 gma-u.5   100817379   DNA polymerase delta catalytic subunit 
 bra-r.6   103873814   DNA polymerase delta catalytic subunit 
 vvi-u.5   100246530   DNA polymerase delta catalytic subunit 
 ppo-u.5   7466858   DNA polymerase delta catalytic subunit 
 mtr-u.5   25489857   DNA polymerase delta catalytic subunit 
 ghi-r.1   107893529   DNA polymerase delta catalytic subunit 
 ghi-r.1   107920673   DNA polymerase delta catalytic subunit 
 bna-r.1   106347949   DNA polymerase delta catalytic subunit 
 bna-r.1   106348005   DNA polymerase delta catalytic subunit 
 cit-r.1   102612202   DNA polymerase delta catalytic subunit 
 osa-u.5   4349968   DNA polymerase delta catalytic subunit-like 
 zma-u.5   103654581   DNA polymerase delta catalytic subunit 
 tae-r.2   123091308   DNA polymerase delta catalytic subunit 
 tae-r.2   123096285   DNA polymerase delta catalytic subunit 
 tae-r.2   123086692   DNA polymerase delta catalytic subunit 
 hvu-r.1   123447930   DNA polymerase delta catalytic subunit 
 sbi-r.1   8072800   DNA polymerase delta catalytic subunit 
 sbi-r.1   8074668   DNA polymerase delta catalytic subunit 
 bdi-r.1   100827521   DNA polymerase delta catalytic subunit 
 cre-r.1   CHLRE_01g015250v5   uncharacterized protein 

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Top 50 coexpressed genes to 101256637 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101256637 (sly-u.5 coexpression data)

CoexMap"101256637"


slyLOC101256637 | Entrez gene ID : 101256637      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 2 1 1 1 1 2 2 1 1 1 3 1 2 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03030 [list] [network] DNA replication (43 genes)
sly03410 [list] [network] Base excision repair (52 genes)
sly03420 [list] [network] Nucleotide excision repair (70 genes)
sly03430 [list] [network] Mismatch repair (34 genes)
sly03440 [list] [network] Homologous recombination (60 genes)
GO BP
GO:0006287 [list] [network] base-excision repair, gap-filling  (2 genes)  IEA  
GO:0045004 [list] [network] DNA replication proofreading  (2 genes)  IEA  
GO:0006297 [list] [network] nucleotide-excision repair, DNA gap filling  (4 genes)  IEA  
GO:0006261 [list] [network] DNA-templated DNA replication  (72 genes)  IEA  
GO CC
GO:0043625 [list] [network] delta DNA polymerase complex  (5 genes)  IEA  
GO MF
GO:0008296 [list] [network] 3'-5'-DNA exonuclease activity  (8 genes)  IEA  
GO:0003887 [list] [network] DNA-directed DNA polymerase activity  (17 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1883 genes)  IEA  
GO:0000166 [list] [network] nucleotide binding  (2632 genes)  IEA  
Protein XP_004249349.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  plas 1,  golg_plas 1  (predict for XP_004249349.1)
Subcellular
localization
TargetP
other 3,  chlo 3  (predict for XP_004249349.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101256637
sly-r.6
for
101256637
sot-r.1
for
102604894
nta-r.1
for
107812440
nta-r.1
for
107781169
ath-u.5
for
AT5G63960
gma-u.5
for
POLD1
gma-u.5
for
100817379
bra-r.6
for
103873814
vvi-u.5
for
100246530
ppo-u.5
for
7466858
mtr-u.5
for
25489857
ghi-r.1
for
107893529
ghi-r.1
for
107920673
bna-r.1
for
106347949
bna-r.1
for
106348005
cit-r.1
for
102612202
osa-u.5
for
4349968
zma-u.5
for
103654581
tae-r.2
for
123091308
tae-r.2
for
123096285
tae-r.2
for
123086692
hvu-r.1
for
123447930
sbi-r.1
for
8072800
sbi-r.1
for
8074668
bdi-r.1
for
100827521
cre-r.1
for
CHLRE_01g015250v5


Ortholog ID: 9750
Species sly sot nta nta ath gma gma bra vvi ppo mtr ghi ghi bna bna cit osa zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC101256637 LOC102604894 LOC107812440 LOC107781169 AT5G63960 POLD1 LOC100817379 LOC103873814 LOC100246530 LOC7466858 LOC25489857 LOC107893529 LOC107920673 LOC106347949 LOC106348005 LOC102612202 LOC4349968 LOC103654581 LOC123091308 LOC123096285 LOC123086692 LOC123447930 LOC8072800 LOC8074668 LOC100827521 CHLRE_01g015250v5
Function* DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta subunit 1 DNA polymerase delta DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit-like DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit DNA polymerase delta catalytic subunit uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 3
sly03460 Fanconi anemia pathway 3
sly03430 Mismatch repair 2
sly03030 DNA replication 2
sly03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03410 Base excision repair 4
sot03440 Homologous recombination 3
sot03040 Spliceosome 2
sot03030 DNA replication 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03410 Base excision repair 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03410 Base excision repair 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 5
ath03030 DNA replication 4
ath03410 Base excision repair 3
ath03460 Fanconi anemia pathway 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 9
gma03430 Mismatch repair 4
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 10
gma03430 Mismatch repair 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 3
vvi03030 DNA replication 2
vvi03410 Base excision repair 2
vvi03420 Nucleotide excision repair 2
vvi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 3
ppo03430 Mismatch repair 3
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03030 DNA replication 2
mtr03410 Base excision repair 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
ghi03030 DNA replication 3
ghi03420 Nucleotide excision repair 3
ghi03430 Mismatch repair 3
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 3
ghi04814 Motor proteins 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 9
bna03430 Mismatch repair 8
bna03410 Base excision repair 4
bna03420 Nucleotide excision repair 4
bna03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 9
bna03430 Mismatch repair 8
bna03410 Base excision repair 4
bna03420 Nucleotide excision repair 4
bna03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03018 RNA degradation 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 5
osa03030 DNA replication 4
osa03410 Base excision repair 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 3
zma03430 Mismatch repair 3
zma03030 DNA replication 3
zma03410 Base excision repair 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03430 Mismatch repair 10
tae03410 Base excision repair 7
tae03420 Nucleotide excision repair 7
tae03440 Homologous recombination 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 9
tae03430 Mismatch repair 8
tae03440 Homologous recombination 8
tae03410 Base excision repair 5
tae03420 Nucleotide excision repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 9
tae03430 Mismatch repair 8
tae03410 Base excision repair 5
tae03420 Nucleotide excision repair 5
tae03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03440 Homologous recombination 3
hvu03020 RNA polymerase 2
hvu03030 DNA replication 2
hvu03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 3
sbi03410 Base excision repair 3
sbi03420 Nucleotide excision repair 3
sbi03430 Mismatch repair 2
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
sbi03430 Mismatch repair 2
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 3
bdi03410 Base excision repair 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 9
cre03410 Base excision repair 7
cre03420 Nucleotide excision repair 6
cre03430 Mismatch repair 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101256637 102604894 107812440 107781169 836517 548092 100817379 103873814 100246530 7466858 25489857 107893529 107920673 106347949 106348005 102612202 4349968 103654581 123091308 123096285 123086692 123447930 8072800 8074668 100827521 5715105
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