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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101257903   polyadenylate-binding protein RBP45-like 
 sly-r.6   101257903   polyadenylate-binding protein RBP45-like 
 sly-m.5   101257903   polyadenylate-binding protein RBP45-like 
 sly-u.5   101261707   polyadenylate-binding protein RBP47 
 sly-u.5   101247965   polyadenylate-binding protein RBP47 
 sly-u.5   101250426   polyadenylate-binding protein RBP45 
 ath-u.5   RBP45B   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   RBP47A   RNA-binding protein 47A 
 ath-u.5   RBP47C'   RNA-binding protein 47C' 
 gma-u.5   100814743   polyadenylate-binding protein RBP45 
 gma-u.5   100814564   polyadenylate-binding protein RBP47 
 gma-u.5   100813616   polyadenylate-binding protein RBP47B' 
 vvi-u.5   100243203   polyadenylate-binding protein RBP47B' 
 vvi-u.5   100258930   polyadenylate-binding protein RBP47 
 ppo-u.5   7462894   polyadenylate-binding protein RBP47 
 ppo-u.5   7458536   polyadenylate-binding protein RBP45B 
 ppo-u.5   7454435   polyadenylate-binding protein RBP45C 
 mtr-u.5   11429879   polyadenylate-binding protein RBP47B' 
 mtr-u.5   11439565   polyadenylate-binding protein RBP45 
 mtr-u.5   25486138   polyadenylate-binding protein RBP45 
 osa-u.5   4329718   polyadenylate-binding protein RBP47 
 osa-u.5   4331788   polyadenylate-binding protein RBP47B' 
 osa-u.5   4333283   RNA-binding protein L-like 
 zma-u.5   100274401   Polyadenylate-binding protein RBP45C 
 zma-u.5   100278143   uncharacterized LOC100278143 
 zma-u.5   100284282   nucleic acid binding protein 

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Top 50 coexpressed genes to 101257903 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101257903 (sly-u.5 coexpression data)

CoexMap"101257903"


slyLOC101257903 | Entrez gene ID : 101257903      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 6 3 3 2 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005829 [list] [network] cytosol  (916 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (315 genes)  IEA  
Protein XP_004248403.1 [sequence] [blastp]
XP_010327241.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  chlo 1,  mito 1,  pero 1,  chlo_mito 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_004248403.1)
nucl 6,  cyto 1,  chlo 1,  plas 1,  pero 1,  cyto_E.R. 1  (predict for XP_010327241.1)
Subcellular
localization
TargetP
other 4  (predict for XP_004248403.1)
other 4  (predict for XP_010327241.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101257903

.
sly-r.6
for
101257903

.
sly-m.5
for
101257903

.
sly-u.5
for
101261707

.
sly-u.5
for
101247965

.
sly-u.5
for
101250426

.
ath-u.5
for
RBP45B

.
ath-u.5
for
RBP47A

.
ath-u.5
for
RBP47C'

.
gma-u.5
for
100814743

.
gma-u.5
for
100814564

.
gma-u.5
for
100813616

.
vvi-u.5
for
100243203

.
vvi-u.5
for
100258930

.
ppo-u.5
for
7462894

.
ppo-u.5
for
7458536

.
ppo-u.5
for
7454435

.
mtr-u.5
for
11429879

.
mtr-u.5
for
11439565

.
mtr-u.5
for
25486138

.
osa-u.5
for
4329718

.
osa-u.5
for
4331788

.
osa-u.5
for
4333283

.
zma-u.5
for
100274401

.
zma-u.5
for
100278143

.
zma-u.5
for
100284282

.


Ortholog ID: 192
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT5G19350 RBP45B LOC100801562 LOC100785454 LOC101255948 LOC101254975 LOC4331788 LOC4344847 LOC103628560 LOC103653663 LOC103869491 LOC103839291 LOC100243203 LOC18104937 LOC18097813 LOC25486138 LOC25482078 LOC123052545 LOC123104011 LOC123426861 LOC123427909 LOC107920130 LOC107942660 LOC125609228 LOC125584144 CHLRE_16g652900v5 LOC8066818 LOC8063033 LOC102590727 LOC102595348 LOC102613263 LOC102608432 LOC100845432 LOC100831361 LOC107774489 LOC107827228
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47B' RNA-binding protein L-like polyadenylate-binding protein RBP47A polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP47B' polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP47-like RNA-binding protein L-like polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP47A-like polyadenylate-binding protein RBP47B'-like uncharacterized protein polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45-like polyadenylate-binding protein RBP47-like polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP47B' polyadenylate-binding protein RBP47C' polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 2
sly04141 Protein processing in endoplasmic reticulum 2
sly04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03015 mRNA surveillance pathway 3
sly03250 Viral life cycle - HIV-1 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 3
osa03050 Proteasome 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03040 Spliceosome 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 3
cre04120 Ubiquitin mediated proteolysis 2
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04814 Motor proteins 2
sot03040 Spliceosome 2
sot03008 Ribosome biogenesis in eukaryotes 2
sot03013 Nucleocytoplasmic transport 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00240 Pyrimidine metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03050 Proteasome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832055 837708 100801562 100785454 101255948 101254975 4331788 4344847 103628560 103653663 103869491 103839291 100243203 18104937 18097813 25486138 25482078 123052545 123104011 123426861 123427909 107920130 107942660 125609228 125584144 66056515 8066818 8063033 102590727 102595348 102613263 102608432 100845432 100831361 107774489 107827228
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