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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101258239   uncharacterized LOC101258239 
 sly-r.6   101258239   uncharacterized LOC101258239 
 sly-m.5   101258239   uncharacterized LOC101258239 
 sly-u.5   101247333   uncharacterized LOC101247333 
 ath-u.5   AT2G18740   Small nuclear ribonucleoprotein family protein 
 ath-u.5   AT4G30330   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100306304   small nuclear ribonucleoprotein E 
 gma-u.5   100500256   small nuclear ribonucleoprotein E 
 gma-u.5   100807929   small nuclear ribonucleoprotein E 
 vvi-u.5   100257667   small nuclear ribonucleoprotein E-like 
 ppo-u.5   18100540   uncharacterized LOC18100540 
 ppo-u.5   18107772   uncharacterized LOC18107772 
 mtr-u.5   11427208   small nuclear ribonucleoprotein E 
 mtr-u.5   11406496   small nuclear ribonucleoprotein E 
 osa-u.5   4344666   uncharacterized LOC4344666 
 osa-u.5   4328158   uncharacterized LOC4328158 
 zma-u.5   100282045   small nuclear ribonucleoprotein E 
 zma-u.5   103649582   small nuclear ribonucleoprotein E-like 

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Top 50 coexpressed genes to 101258239 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101258239 (sly-u.5 coexpression data)

CoexMap"101258239"


slyLOC101258239 | Entrez gene ID : 101258239      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 3 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03040 [list] [network] Spliceosome (385 genes)
GO BP
GO:0000387 [list] [network] spliceosomal snRNP assembly  (24 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (162 genes)  IEA  
GO CC
GO:0034715 [list] [network] pICln-Sm protein complex  (10 genes)  IEA  
GO:0005687 [list] [network] U4 snRNP  (12 genes)  IEA  
GO:0005682 [list] [network] U5 snRNP  (17 genes)  IEA  
GO:0005685 [list] [network] U1 snRNP  (23 genes)  IEA  
GO:0005686 [list] [network] U2 snRNP  (24 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (26 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (37 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
Protein XP_004235398.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 3,  cyto_nucl 3  (predict for XP_004235398.1)
Subcellular
localization
TargetP
mito 5,  scret 3  (predict for XP_004235398.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101258239

.
sly-r.6
for
101258239

.
sly-m.5
for
101258239

.
sly-u.5
for
101247333

.
ath-u.5
for
AT2G18740

.
ath-u.5
for
AT4G30330

.
gma-u.5
for
100306304

.
gma-u.5
for
100500256

.
gma-u.5
for
100807929

.
vvi-u.5
for
100257667

.
ppo-u.5
for
18100540

.
ppo-u.5
for
18107772

.
mtr-u.5
for
11427208

.
mtr-u.5
for
11406496

.
osa-u.5
for
4344666

.
osa-u.5
for
4328158

.
zma-u.5
for
100282045

.
zma-u.5
for
103649582

.


Ortholog ID: 4190
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi bdi nta nta
Symbol AT2G18740 AT4G30330 LOC100500256 LOC100306304 LOC101247333 LOC101258239 LOC4344666 LOC4328158 LOC103649582 LOC100282045 LOC103874062 LOC103828371 LOC100257667 LOC18100540 LOC18107772 LOC11427208 LOC11406496 LOC123132020 LOC123143556 LOC123407643 LOC107909182 LOC107928261 LOC106375940 LOC106379109 CHLRE_08g385200v5 LOC8079513 LOC102600833 LOC102619789 LOC102623698 LOC100836785 LOC100821943 LOC107779871 LOC107810445
Function* Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein small nuclear ribonucleoprotein E small nuclear ribonucleoprotein E uncharacterized LOC101247333 uncharacterized LOC101258239 uncharacterized LOC4344666 uncharacterized LOC4328158 small nuclear ribonucleoprotein E-like small nuclear ribonucleoprotein E small nuclear ribonucleoprotein E small nuclear ribonucleoprotein E small nuclear ribonucleoprotein E-like uncharacterized LOC18100540 uncharacterized LOC18107772 small nuclear ribonucleoprotein E small nuclear ribonucleoprotein E small nuclear ribonucleoprotein E small nuclear ribonucleoprotein E small nuclear ribonucleoprotein E-like small nuclear ribonucleoprotein E small nuclear ribonucleoprotein E small nuclear ribonucleoprotein E small nuclear ribonucleoprotein E-like uncharacterized protein small nuclear ribonucleoprotein E small nuclear ribonucleoprotein E-like uncharacterized LOC102619789 uncharacterized LOC102623698 small nuclear ribonucleoprotein E small nuclear ribonucleoprotein E uncharacterized LOC107779871 uncharacterized LOC107810445
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03010 Ribosome 4
ath03020 RNA polymerase 4
ath03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 8
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma03040 Spliceosome 7
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03018 RNA degradation 4
gma03010 Ribosome 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03010 Ribosome 6
sly03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 12
zma03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
zma03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra04145 Phagosome 2
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03010 Ribosome 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03020 RNA polymerase 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04130 SNARE interactions in vesicular transport 2
tae04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
hvu03040 Spliceosome 3
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 11
ghi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 12
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 13
cre03015 mRNA surveillance pathway 4
cre03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 7
sbi03010 Ribosome 5
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot03040 Spliceosome 5
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 14
cit04122 Sulfur relay system 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 9
bdi03010 Ribosome 3
bdi03020 RNA polymerase 2
bdi03420 Nucleotide excision repair 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
nta03040 Spliceosome 7
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 3
nta04120 Ubiquitin mediated proteolysis 2
nta03250 Viral life cycle - HIV-1 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816389 829156 100500256 100306304 101247333 101258239 4344666 4328158 103649582 100282045 103874062 103828371 100257667 18100540 18107772 11427208 11406496 123132020 123143556 123407643 107909182 107928261 106375940 106379109 5719795 8079513 102600833 102619789 102623698 100836785 100821943 107779871 107810445
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