ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101258297	short-chain dehydrogenase TIC 32 B, chloroplastic
sly-r.6	101258297	short-chain dehydrogenase TIC 32 B, chloroplastic
sly-m.5	101258297	short-chain dehydrogenase TIC 32 B, chloroplastic
sly-u.5	101258230	short-chain dehydrogenase TIC 32, chloroplastic-like
sly-u.5	101263363	short-chain dehydrogenase TIC 32 B, chloroplastic
sot-r.1	102580426	short-chain dehydrogenase TIC 32, chloroplastic-like
sot-r.1	102579773	short-chain dehydrogenase TIC 32, chloroplastic-like
sot-r.1	102579450	short-chain dehydrogenase TIC 32, chloroplastic-like
nta-r.1	107778526	short-chain dehydrogenase TIC 32, chloroplastic
nta-r.1	107793887	short-chain dehydrogenase TIC 32 B, chloroplastic-like
nta-r.1	107776116	short-chain dehydrogenase TIC 32, chloroplastic-like
ath-u.5	AT2G37540	NAD(P)-binding Rossmann-fold superfamily protein
ath-u.5	AT5G50130	NAD(P)-binding Rossmann-fold superfamily protein
ath-u.5	AT5G02540	NAD(P)-binding Rossmann-fold superfamily protein
gma-u.5	100795299	retinol dehydrogenase 12-like
gma-u.5	100796920	short-chain dehydrogenases/reductase family protein
gma-u.5	100793843	short-chain dehydrogenase TIC 32, chloroplastic
bra-r.6	103847440	short-chain dehydrogenase TIC 32 A, chloroplastic
bra-r.6	103843875	short-chain dehydrogenase TIC 32 A, chloroplastic
bra-r.6	103834281	short-chain dehydrogenase TIC 32, chloroplastic-like
vvi-u.5	100242214	short-chain dehydrogenase TIC 32, chloroplastic
vvi-u.5	100246509	short-chain dehydrogenase TIC 32 B, chloroplastic
vvi-u.5	100247484	short-chain dehydrogenase TIC 32, chloroplastic
ppo-u.5	7458067	short-chain dehydrogenase TIC 32 B, chloroplastic
ppo-u.5	7457761	short-chain dehydrogenase TIC 32 B, chloroplastic
ppo-u.5	7474057	short-chain dehydrogenase TIC 32, chloroplastic
mtr-u.5	11432681	short-chain dehydrogenase TIC 32 B, chloroplastic
mtr-u.5	11435990	short-chain dehydrogenase TIC 32 B, chloroplastic
mtr-u.5	25484127	short-chain dehydrogenase TIC 32 B, chloroplastic
ghi-r.1	107929271	short-chain dehydrogenase TIC 32, chloroplastic
ghi-r.1	107929263	short-chain dehydrogenase TIC 32, chloroplastic
ghi-r.1	107926626	short-chain dehydrogenase TIC 32 B, chloroplastic
bna-r.1	106377123	short-chain dehydrogenase TIC 32 B, chloroplastic-like
bna-r.1	106402344	short-chain dehydrogenase TIC 32 B, chloroplastic-like
cit-r.1	102621831	short-chain dehydrogenase TIC 32, chloroplastic-like
cit-r.1	102621527	short-chain dehydrogenase TIC 32, chloroplastic-like
cit-r.1	102621246	short-chain dehydrogenase TIC 32, chloroplastic-like
osa-u.5	9269206	short-chain dehydrogenase TIC 32, chloroplastic
osa-u.5	4349944	short-chain dehydrogenase TIC 32, chloroplastic
osa-u.5	4335398	short-chain dehydrogenase TIC 32, chloroplastic
zma-u.5	100500950	retinol dehydrogenase 11
zma-u.5	100272665	Short-chain dehydrogenase TIC 32 chloroplastic
zma-u.5	103641540	short-chain dehydrogenase TIC 32, chloroplastic
tae-r.2	123060169	short-chain dehydrogenase TIC 32 B, chloroplastic
hvu-r.1	123396478	short-chain dehydrogenase TIC 32 B, chloroplastic-like
hvu-r.1	123438134	short-chain dehydrogenase TIC 32, chloroplastic-like
sbi-r.1	8058770	short-chain dehydrogenase TIC 32, chloroplastic
bdi-r.1	100827514	uncharacterized LOC100827514
bdi-r.1	100830870	short-chain dehydrogenase TIC 32, chloroplastic
bdi-r.1	100827273	short-chain dehydrogenase TIC 32, chloroplastic
cre-r.1	CHLRE_12g556750v5	uncharacterized protein
cre-r.1	CHLRE_12g556802v5	uncharacterized protein
cre-r.1	CHLRE_09g398252v5	uncharacterized protein

Top 50 coexpressed genes to 101258297 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101258297 (sly-u.5 coexpression data)

CoexMap"101258297"

[Cytoscape]

Annotation

functional annotation

KEGG

sly01240 [list] [network] Biosynthesis of cofactors (247 genes)

GO BP

GO CC

GO MF

Protein

XP_004246442.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, mito 4, chlo_mito 4

(predict for XP_004246442.1)

Subcellular
localization
TargetP

other 5

(predict for XP_004246442.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101258297	sly-r.6 for 101258297	sly-m.5 for 101258297	sly-u.5 for 101258230	sly-u.5 for 101263363	sot-r.1 for 102580426	sot-r.1 for 102579773	sot-r.1 for 102579450	nta-r.1 for 107778526	nta-r.1 for 107793887	nta-r.1 for 107776116	ath-u.5 for AT2G37540	ath-u.5 for AT5G50130	ath-u.5 for AT5G02540	gma-u.5 for 100795299	gma-u.5 for 100796920	gma-u.5 for 100793843	bra-r.6 for 103847440	bra-r.6 for 103843875	bra-r.6 for 103834281	vvi-u.5 for 100242214	vvi-u.5 for 100246509	vvi-u.5 for 100247484	ppo-u.5 for 7458067	ppo-u.5 for 7457761	ppo-u.5 for 7474057	mtr-u.5 for 11432681	mtr-u.5 for 11435990	mtr-u.5 for 25484127	ghi-r.1 for 107929271	ghi-r.1 for 107929263	ghi-r.1 for 107926626	bna-r.1 for 106377123	bna-r.1 for 106402344	cit-r.1 for 102621831	cit-r.1 for 102621527	cit-r.1 for 102621246	osa-u.5 for 9269206	osa-u.5 for 4349944	osa-u.5 for 4335398	zma-u.5 for 100500950	zma-u.5 for 100272665	zma-u.5 for 103641540	tae-r.2 for 123060169	hvu-r.1 for 123396478	hvu-r.1 for 123438134	sbi-r.1 for 8058770	bdi-r.1 for 100827514	bdi-r.1 for 100830870	bdi-r.1 for 100827273	cre-r.1 for CHLRE_12g556750v5	cre-r.1 for CHLRE_12g556802v5	cre-r.1 for CHLRE_09g398252v5

Ortholog

Ortholog ID: 223

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

short-chain dehydrogenase TIC 32 B, chloroplastic