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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101259005   pentatricopeptide repeat-containing protein At5g03800 
 sly-r.6   101259005   pentatricopeptide repeat-containing protein At5g03800 
 sot-r.1   102581526   pentatricopeptide repeat-containing protein At5g03800 
 nta-r.1   107767562   pentatricopeptide repeat-containing protein At5g03800-like 
 nta-r.1   107818401   pentatricopeptide repeat-containing protein At5g03800-like 
 ath-u.5   EMB175   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   106797211   pentatricopeptide repeat-containing protein At5g03800 
 gma-u.5   100784704   pentatricopeptide repeat-containing protein At5g03800 
 bra-r.6   103850513   pentatricopeptide repeat-containing protein At5g03800 
 vvi-u.5   100266541   pentatricopeptide repeat-containing protein At5g03800 
 ppo-u.5   7468790   pentatricopeptide repeat-containing protein At5g03800 
 mtr-u.5   25499358   pentatricopeptide repeat-containing protein At5g03800 
 ghi-r.1   107905339   pentatricopeptide repeat-containing protein At5g03800 
 ghi-r.1   121214032   pentatricopeptide repeat-containing protein At5g03800 
 bna-r.1   106425314   pentatricopeptide repeat-containing protein At5g03800 
 cit-r.1   102622583   pentatricopeptide repeat-containing protein At5g03800 
 osa-u.5   4342518   pentatricopeptide repeat-containing protein At5g03800 
 zma-u.5   103648257   pentatricopeptide repeat-containing protein 
 tae-r.2   123190049   pentatricopeptide repeat-containing protein At5g03800-like 
 tae-r.2   123046296   pentatricopeptide repeat-containing protein At5g03800 
 tae-r.2   123054159   pentatricopeptide repeat-containing protein At5g03800 
 hvu-r.1   123426084   pentatricopeptide repeat-containing protein At5g03800 
 sbi-r.1   8081179   pentatricopeptide repeat-containing protein At5g03800 
 bdi-r.1   100845725   pentatricopeptide repeat-containing protein At5g03800 

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Top 50 coexpressed genes to 101259005 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101259005 (sly-u.5 coexpression data)

CoexMap"101259005"


slyLOC101259005 | Entrez gene ID : 101259005    
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 2 1 1 1 1 2 1 1 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (280 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1242 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004231252.1 [sequence] [blastp]
XP_010312264.1 [sequence] [blastp]
XP_025888237.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  mito 1,  plas 1,  extr 1,  nucl_plas 1,  mito_plas 1  (predict for XP_004231252.1)
plas 6,  E.R. 2,  vacu 1  (predict for XP_010312264.1)
chlo 4,  nucl 1,  extr 1,  E.R. 1,  cyto 1,  mito 1,  vacu 1,  cysk_nucl 1,  nucl_plas 1,  E.R._plas 1  (predict for XP_025888237.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_004231252.1)
scret 7  (predict for XP_010312264.1)
other 8,  scret 4  (predict for XP_025888237.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101259005
sly-r.6
for
101259005
sot-r.1
for
102581526
nta-r.1
for
107767562
nta-r.1
for
107818401
ath-u.5
for
EMB175
gma-u.5
for
106797211
gma-u.5
for
100784704
bra-r.6
for
103850513
vvi-u.5
for
100266541
ppo-u.5
for
7468790
mtr-u.5
for
25499358
ghi-r.1
for
107905339
ghi-r.1
for
121214032
bna-r.1
for
106425314
cit-r.1
for
102622583
osa-u.5
for
4342518
zma-u.5
for
103648257
tae-r.2
for
123190049
tae-r.2
for
123046296
tae-r.2
for
123054159
hvu-r.1
for
123426084
sbi-r.1
for
8081179
bdi-r.1
for
100845725


Ortholog ID: 10936
Species sly sot nta nta ath gma gma bra vvi ppo mtr ghi ghi bna cit osa zma tae tae tae hvu sbi bdi
Symbol LOC101259005 LOC102581526 LOC107767562 LOC107818401 EMB175 LOC106797211 LOC100784704 LOC103850513 LOC100266541 LOC7468790 LOC25499358 LOC107905339 LOC121214032 LOC106425314 LOC102622583 LOC4342518 LOC103648257 LOC123190049 LOC123046296 LOC123054159 LOC123426084 LOC8081179 LOC100845725
Function* pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800-like pentatricopeptide repeat-containing protein At5g03800-like Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At5g03800-like pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800 pentatricopeptide repeat-containing protein At5g03800
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101259005 102581526 107767562 107818401 831717 106797211 100784704 103850513 100266541 7468790 25499358 107905339 121214032 106425314 102622583 4342518 103648257 123190049 123046296 123054159 123426084 8081179 100845725
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